Browse Element(s) Details


Os.12712.1.S1_at

Description gb:AK121370.1
DB_XREF= gi:37990993
TID=Os.12712.1
CNT=78
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.12712 (NCBI UniGene Cluster)
UG_TITLE=Clone Osl81 apospory-associated protein mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023125M12, full insert sequence.
FL= gb:AK098858.1 gb:AK121370.1 gb:AK062078.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3381011/11Ankyrin repeat domain protein 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g33750NANA9+19932715..19937200retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g33760NANA9+19938391..19938945retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g33770OsAffx.17988.1.S1_at11/119+19940056..19940697Protein transport protein Sec61 alpha subunit isoform 1, putative
LOC_Os09g33780Os.5192.1.S1_at9/119+19943043..19948238expressed protein
LOC_Os09g33790Os.20359.1.S1_at10/119+19950223..19953473SnRK1-interacting protein 1, putative, expressed
LOC_Os09g33790OsAffx.6476.1.S1_at10/119+19950223..19953473SnRK1-interacting protein 1, putative, expressed
LOC_Os09g33800Os.9057.1.S1_a_at11/119+19955242..19957444expressed protein
LOC_Os09g33810Os.12712.1.S1_at11/119+19960623..19963923Ankyrin repeat domain protein 2, putative, expressed
LOC_Os09g33820Os.14901.1.A1_a_at11/119+19964721..19969670phospholipase A1, putative, expressed
LOC_Os09g33830OsAffx.30129.1.S1_at11/119+19970022..19974776anthocyanin-related membrane protein 1, putative, expressed
LOC_Os09g33840OsAffx.19826.2.S1_at4/119+19977286..19979138hypothetical protein
LOC_Os09g33840OsAffx.20913.1.A1_at1/119+19977286..19979138hypothetical protein
LOC_Os09g33850OsAffx.30130.1.S1_at11/119+19979959..19985742Phosphatidylethanolamine-binding protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009816biological_processdefense response to pathogenic bacteria, incompatible interaction
GO:0005515molecular_functionprotein binding
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12712.1.S1_at--657--8431Chr09:19962970..19962994 (25 bp)
GGCCTTACATTTTGCGTGTGGTTAC
LOC_Os09g33810
Os.12712.1.S1_at--529--1351Chr09:19963118..19963142 (25 bp)
AGAGATCCTTCTGGAGGCAGGTGCT
LOC_Os09g33810
Os.12712.1.S1_at--1129--3571Chr09:19963182..19963206 (25 bp)
CATTACGCTGCTGGATATGGTCGGA
LOC_Os09g33810
Os.12712.1.S1_at--190--4811Chr09:19963412..19963436 (25 bp)
GCTCGAGATGGACGCTTTCCTATAA
LOC_Os09g33810
Os.12712.1.S1_at--347--10471Chr09:19963498..19963522 (25 bp)
TTACTGCATACCCAAATCATCATCG
LOC_Os09g33810
Os.12712.1.S1_at--1010--3551Chr09:19963515..19963539 (25 bp)
CATCATCGACTCTTTTAGCTTTGGT
LOC_Os09g33810
Os.12712.1.S1_at--617--3051Chr09:19963567..19963591 (25 bp)
AATCGTTGCTATGTTTGGTGCTCCG
LOC_Os09g33810
Os.12712.1.S1_at--176--9291Chr09:19963631..19963655 (25 bp)
TCCGTTTCATCCTTTGTATTCCTAT
LOC_Os09g33810
Os.12712.1.S1_at--821--6871Chr09:19963646..19963670 (25 bp)
GTATTCCTATGTTGCTGAGTCTGGT
LOC_Os09g33810
Os.12712.1.S1_at--770--1391Chr09:19963676..19963700 (25 bp)
AGACGTTGCTCCTGTTTTTCTCAGC
LOC_Os09g33810
Os.12712.1.S1_at--107--10391Chr09:19963691..19963715 (25 bp)
TTTTCTCAGCGTTTTCGTGTCAGAT
LOC_Os09g33810
Target Sequence 
GGCCTTACATTTTGCGTGTGGTTACGGTGAGTTGAAATGCGCAGAGATCCTTCTGGAGGCAGGTGCTGCTGTAAACGCAC
TGGATAAGAACAAGAACACCCCACTGCATTACGCTGCTGGATATGGTCGGAAAGAATGTGTGGATCTTCTGCTGAAGCAT
GGCGCTGCTGTCACGCCCCAGAATCTGGACGGGAAGACCCCCATCGAGGTGGCNAAGCTGAACAACCAGGATGAGGTCCT
CAAGGTGCTCGAGATGGACGCTTTCCTATAAAGAAACCAATGCCAAATCTCACGCTCATCATCACCGGCTCGTCGCTTTA
CAGTTCAGATTTTTACTGCATACCCAAATCATCATCGACTCTTTTAGCTTTGGTTTTGGTGTGGTGGTGGTACATTCGTT
GAATCGTTGCTATGTTTGGTGCTCCGATTTGTAATCTGNTTCACTTCCCCGTTACACNTGCATCACTCCGTTTCATCCTT
TGTATTCCTATGTTGCTGAGTCTGGTGTTGCAGACGTTGCTCCTGTTTTTCTCAGCGTTTTCGTGTCAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12712.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis