Browse Element(s) Details


Os.9057.1.S1_a_at

Description gb:AK104595.1
DB_XREF= gi:32989804
TID=Os.9057.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9057 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-308-D09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-308-D09, full insert sequence.
FL= gb:AK104595.1 gb:AK061814.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3380011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g33740OsAffx.6475.1.S1_at11/119+19921609..19931232Zinc finger, ZZ type family protein, expressed
LOC_Os09g33740Os.52179.1.S1_at9/119+19921609..19931232Zinc finger, ZZ type family protein, expressed
LOC_Os09g33750NANA9+19932715..19937200retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g33760NANA9+19938391..19938945retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g33770OsAffx.17988.1.S1_at11/119+19940056..19940697Protein transport protein Sec61 alpha subunit isoform 1, putative
LOC_Os09g33780Os.5192.1.S1_at9/119+19943043..19948238expressed protein
LOC_Os09g33790Os.20359.1.S1_at10/119+19950223..19953473SnRK1-interacting protein 1, putative, expressed
LOC_Os09g33790OsAffx.6476.1.S1_at10/119+19950223..19953473SnRK1-interacting protein 1, putative, expressed
LOC_Os09g33800Os.9057.1.S1_a_at11/119+19955242..19957444expressed protein
LOC_Os09g33810Os.12712.1.S1_at11/119+19960623..19963923Ankyrin repeat domain protein 2, putative, expressed
LOC_Os09g33820Os.14901.1.A1_a_at11/119+19964721..19969670phospholipase A1, putative, expressed
LOC_Os09g33830OsAffx.30129.1.S1_at11/119+19970022..19974776anthocyanin-related membrane protein 1, putative, expressed
LOC_Os09g33840OsAffx.19826.2.S1_at4/119+19977286..19979138hypothetical protein
LOC_Os09g33840OsAffx.20913.1.A1_at1/119+19977286..19979138hypothetical protein
LOC_Os09g33850OsAffx.30130.1.S1_at11/119+19979959..19985742Phosphatidylethanolamine-binding protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9057.1.S1_a_at--938--8571Chr09:19956652..19956676 (25 bp)
TGGTTGCATCTGTGCGACGCTACAA
LOC_Os09g33800
Os.9057.1.S1_a_at--775--611Chr09:19956759..19956870 (25 bp)
ATGCGTCATGCGTATGTTGATCCGA
LOC_Os09g33800
Os.9057.1.S1_a_at--955--2191Chr09:19956879..19956903 (25 bp)
ACAAAGATTTTCCTTCAGCAGCCTG
LOC_Os09g33800
Os.9057.1.S1_a_at--659--2031Chr09:19956958..19956982 (25 bp)
ACTAGTGTTCTTACCTGATTGCAAA
LOC_Os09g33800
Os.9057.1.S1_a_at--409--5451Chr09:19956983..19957007 (25 bp)
GAACCCATATGTTCGAGCCTATGAA
LOC_Os09g33800
Os.9057.1.S1_a_at--540--5491Chr09:19957005..19957029 (25 bp)
GAACATATGGATTTCGGCCTCTAGT
LOC_Os09g33800
Os.9057.1.S1_a_at--894--4291Chr09:19957022..19957046 (25 bp)
CCTCTAGTCGCGTATCATGCTATTA
LOC_Os09g33800
Os.9057.1.S1_a_at--836--2511Chr09:19957063..19957087 (25 bp)
AAGCTTCATGTTGCCCAGAAACCTA
LOC_Os09g33800
Os.9057.1.S1_a_at--1091--7731Chr09:19957131..19957155 (25 bp)
GGTGTACATATTCCGTAGTCCTCTG
LOC_Os09g33800
Os.9057.1.S1_a_at--15--1151Chr09:19957147..19957171 (25 bp)
AGTCCTCTGGACTTGGTGCAAAAAA
LOC_Os09g33800
Os.9057.1.S1_a_at--899--5211Chr09:19957198..19957222 (25 bp)
GAATTATCATTGCTCGTGCCAGCTT
LOC_Os09g33800
Target Sequence 
TGGTTGCATCTGTGCGACGCTACAATCAGTTTGAGGCCCAGTCTGCCGCAAGTATGGCGCCACGTGTGGACCCGCTACAA
GCTGTTCAGACTCCTGTTGATGATATGATGCGTCATGCGTATGTTGATCCGAACGATCCTACAAAGATTTTCCTTCAGCA
GCCTGCGCCAGAGTCACAGCTGAGGAGGAGAAACTACCACGGACGGGCTGACAATGCGTACTAGTGTTCTTACCTGATTG
CAAAGAACCCATATGTTCGAGCCTATGAACATATGGATTTCGGCCTCTAGTCGCGTATCATGCTATTACGTGGGTGTGAA
ATGAAAGCTTCATGTTGCCCAGAAACCTATTGTATATCTTTTATGCCATATTCAGTTGCATATCTCAATAATGGTGTACA
TATTCCGTAGTCCTCTGGACTTGGTGCAAAAAATGGTTTATTTGATCCCATGGTGTATGGAATTATCATTGCTCGTGCCA
GCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9057.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis