Browse Element(s) Details


OsAffx.30129.1.S1_at

Description tigr:9637.m02914
TID=OsAffx.30129.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3383011/11anthocyanin-related membrane protein 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g33780Os.5192.1.S1_at9/119+19943043..19948238expressed protein
LOC_Os09g33790Os.20359.1.S1_at10/119+19950223..19953473SnRK1-interacting protein 1, putative, expressed
LOC_Os09g33790OsAffx.6476.1.S1_at10/119+19950223..19953473SnRK1-interacting protein 1, putative, expressed
LOC_Os09g33800Os.9057.1.S1_a_at11/119+19955242..19957444expressed protein
LOC_Os09g33810Os.12712.1.S1_at11/119+19960623..19963923Ankyrin repeat domain protein 2, putative, expressed
LOC_Os09g33820Os.14901.1.A1_a_at11/119+19964721..19969670phospholipase A1, putative, expressed
LOC_Os09g33830OsAffx.30129.1.S1_at11/119+19970022..19974776anthocyanin-related membrane protein 1, putative, expressed
LOC_Os09g33840OsAffx.19826.2.S1_at4/119+19977286..19979138hypothetical protein
LOC_Os09g33840OsAffx.20913.1.A1_at1/119+19977286..19979138hypothetical protein
LOC_Os09g33850OsAffx.30130.1.S1_at11/119+19979959..19985742Phosphatidylethanolamine-binding protein, expressed
LOC_Os09g33860OsAffx.17989.1.S1_s_at11/119+19992273..19995387Protein kinase domain containing protein, expressed
LOC_Os09g33860OsAffx.17989.1.S1_at11/119+19992273..19995387Protein kinase domain containing protein, expressed
LOC_Os09g33860Os.6990.1.S1_at4/119+19992273..19995387Protein kinase domain containing protein, expressed
LOC_Os09g33870Os.5580.1.S1_at9/119+19996685..19999169U1 small nuclear ribonucleoprotein 70 kDa, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30129.1.S1_at--970--7491Chr09:19971665..19971689 (25 bp)
GTGGTGCAACTATGCTCAATCTCTC
LOC_Os09g33830
OsAffx.30129.1.S1_at--986--191Chr09:19971472..19971496 (25 bp)
ATTTCGTTGCTTTTGCTGGCACGGC
LOC_Os09g33830
OsAffx.30129.1.S1_at--732--1612Chr02:31490599..31490623 (25 bp)
AGCTGGCCTTGTCATCTACTCATAC
NONE
OsAffx.30129.1.S1_at--972--2911Chr09:19970928..19970952 (25 bp)
AAGGAGGTCTCCTCGTTGGCTGCTA
LOC_Os09g33830
OsAffx.30129.1.S1_at--569--10871Chr09:19970918..19970937 (20 bp)
TTGGCTGCTACTACCTCAAGTGTGA
LOC_Os09g33830
OsAffx.30129.1.S1_at--354--4291Chr09:19970827..19970924 (25 bp)
CCTCAAGTGTGATAGCTGGTAGCCT
LOC_Os09g33830
OsAffx.30129.1.S1_at--943--10571Chr09:19970572..19970596 (25 bp)
TTCTATGGAGGCTCTGATGTACAGA
LOC_Os09g33830
OsAffx.30129.1.S1_at--5--1171Chr09:19970536..19970560 (25 bp)
AGTCAGTTTCAACATTGTGCCAGCC
LOC_Os09g33830
OsAffx.30129.1.S1_at--843--3591Chr09:19970524..19970548 (25 bp)
CATTGTGCCAGCCAGAGTATAGAAT
LOC_Os09g33830
OsAffx.30129.1.S1_at--391--491Chr09:19970110..19970134 (25 bp)
ATCTGGAGGATAAGGCTGCGCAAGC
LOC_Os09g33830
OsAffx.30129.1.S1_at--86--8331Chr09:19970097..19970121 (25 bp)
GGCTGCGCAAGCCTTTTTTGGCACT
LOC_Os09g33830
Target Sequence 
GTGGTGCAACTATGCTCAATCTCTCCCTTTTGACCTCGGACATGTGGGCTGTTCTAATCCGTATCTTCGCTTACCATGAG
AAGGTTGATTGGATGTATTTCGTTGCTTTTGCTGGCACGGCAGCTGGCCTTGTCATCTACTCATACAAGGGCTCCAAGGT
GGCGGAGGAGACGGCGCAGGTCGCCGGCGCGACGGACGAGGAGGCCGCGACGCGAGTTGCCGGCGCCGGAGACGATGAGC
CAGCCTCCACCAACAAGGAGGTCTCCTCGTTGGCTGCTACTACCTCAAGTGTGATAGCTGGTAGCCTGGTACATATGGGC
AAGAGAGATTTCTATGGAGGCTCTGATGTACAGAGTATTTCAGGCAGTCAGTTTCAACATTGTGCCAGCCAGAGTATAGA
ATGGGCATGGCTAGTGAAGAGAGTCGAGGTGATCCAAAATATAACAAATATAAAGTTAGCTAGTGCAAGAAATCTGGAGG
ATAAGGCTGCGCAAGCCTTTTTTGGCACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30129.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis