Browse Element(s) Details


Os.54030.1.S1_at

Description gb:AK101417.1
DB_XREF= gi:32986626
TID=Os.54030.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54030 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033037N09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033037N09, full insert sequence.
FL= gb:AK101417.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3372011/11Protein transport protein Sec61 alpha subunit isoform A, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g33690Os.17433.1.S1_at11/119+19894746..19903996retrotransposon protein, putative, unclassified, expressed
LOC_Os09g33690Os.46223.1.S1_s_at11/119+19894746..19903996retrotransposon protein, putative, unclassified, expressed
LOC_Os09g33690OsAffx.15220.2.S1_s_at8/119+19894746..19903996retrotransposon protein, putative, unclassified, expressed
LOC_Os09g33690OsAffx.15220.1.S1_s_at7/119+19894746..19903996retrotransposon protein, putative, unclassified, expressed
LOC_Os09g33700NANA9+19907320..19907562expressed protein
LOC_Os09g33710Os.52315.1.S1_at11/119+19908250..19914000Glycosyl hydrolase family 1 protein, expressed
LOC_Os09g33720Os.54030.1.S1_at11/119+19917004..19919828Protein transport protein Sec61 alpha subunit isoform A, putative, expressed
LOC_Os09g33730OsAffx.30128.1.S1_s_at11/119+19920369..19921029expressed protein
LOC_Os09g33740OsAffx.6475.1.S1_at11/119+19921609..19931232Zinc finger, ZZ type family protein, expressed
LOC_Os09g33740Os.52179.1.S1_at9/119+19921609..19931232Zinc finger, ZZ type family protein, expressed
LOC_Os09g33750NANA9+19932715..19937200retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g33760NANA9+19938391..19938945retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g33770OsAffx.17988.1.S1_at11/119+19940056..19940697Protein transport protein Sec61 alpha subunit isoform 1, putative
LOC_Os09g33780Os.5192.1.S1_at9/119+19943043..19948238expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009306biological_processprotein secretion
GO:0016020cellular_componentmembrane
GO:0015450molecular_functionprotein translocase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54030.1.S1_at--172--8111Chr09:19919181..19919205 (25 bp)
GGACCCGTTCCATGCATTTATATAT
LOC_Os09g33720
Os.54030.1.S1_at--278--7231Chr09:19919206..19919230 (25 bp)
GTCGCATTCGTGCTTATTTCATGTG
LOC_Os09g33720
Os.54030.1.S1_at--331--791Chr09:19919226..19919250 (25 bp)
ATGTGTGTTTATCTCAATGGGTCTT
LOC_Os09g33720
Os.54030.1.S1_at--576--7811Chr09:19919245..19919269 (25 bp)
GGTCTTATGGTCTGTGCATCTTCAA
LOC_Os09g33720
Os.54030.1.S1_at--819--5431Chr09:19919411..19919435 (25 bp)
GAACGAAGACTGAGGCTTGCCCAGC
LOC_Os09g33720
Os.54030.1.S1_at--1018--4531Chr09:19919434..19919458 (25 bp)
GCCCGACTCAATACATGCGAACGAA
LOC_Os09g33720
Os.54030.1.S1_at--410--4111Chr09:19919455..19919479 (25 bp)
CGAAATTCGGCGTCATGTCATGAGG
LOC_Os09g33720
Os.54030.1.S1_at--841--6831Chr09:19919496..19919520 (25 bp)
GTTTCTGTGCCGGTGTACTAATAAT
LOC_Os09g33720
Os.54030.1.S1_at--613--151Chr09:19919561..19919585 (25 bp)
ATTATGCTTGCTGTGACTGCTTCAT
LOC_Os09g33720
Os.54030.1.S1_at--230--3431Chr09:19919602..19919626 (25 bp)
CAGAGCTAGTGAGGTCGGGTCCTTT
LOC_Os09g33720
Os.54030.1.S1_at--750--9231Chr09:19919621..19919645 (25 bp)
TCCTTTGGCTTCTGACTGATCGAGA
LOC_Os09g33720
Target Sequence 
GGACCCGTTCCATGCATTTATATATGTCGCATTCGTGCTTATTTCATGTGTGTTTATCTCAATGGGTCTTATGGTCTGTG
CATCTTCAAAAGGAGTTTTCAACGGGTTTGTTGTGTTAAATATGCAGGAGGAACGAAGACTGAGGCTTGCCCAGCCCGAC
TCAATACATGCGAACGAAATTCGGCGTCATGTCATGAGGGCAGCTTGTGTTGGTGGTTTCTGTGCCGGTGTACTAATAAT
TTTCGCAGATCTCATTGGGGTGTTTTGTTCTGGGACTGGAATTATGCTTGCTGTGACTGCTTCATATCCTTATGTTGATG
GCAGAGCTAGTGAGGTCGGGTCCTTTGGCTTCTGACTGATCGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54030.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis