Browse Element(s) Details


OsAffx.30127.1.S1_at

Description tigr:9637.m02897
TID=OsAffx.30127.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3365011/11expressed protein
LOC_Os09g336402/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g33610Os.23748.1.A1_at3/119+19841686..19850769retrotransposon protein, putative, unclassified
LOC_Os09g33620OsAffx.30125.1.S1_at8/119+19853812..19856904F-box domain containing protein, expressed
LOC_Os09g33630Os.36979.1.S1_x_at11/119+19862703..19865816Protein kinase domain containing protein, expressed
LOC_Os09g33630Os.16896.1.S1_at11/119+19862703..19865816Protein kinase domain containing protein, expressed
LOC_Os09g33630OsAffx.30126.2.S1_x_at2/119+19862703..19865816Protein kinase domain containing protein, expressed
LOC_Os09g33630OsAffx.30126.2.S1_at1/119+19862703..19865816Protein kinase domain containing protein, expressed
LOC_Os09g33640OsAffx.30127.1.S1_at2/119+19867717..19868313expressed protein
LOC_Os09g33650OsAffx.30127.1.S1_at11/119+19874298..19875147expressed protein
LOC_Os09g33660NANA9+19876986..19877242hypothetical protein
LOC_Os09g33670Os.50184.1.S1_at11/119+19877907..19881653Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g33670Os.19059.1.S1_at11/119+19877907..19881653Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g33680Os.9105.1.S1_at11/119+19882169..19887645Glycosyl hydrolase family 1 protein, expressed
LOC_Os09g33690Os.17433.1.S1_at11/119+19894746..19903996retrotransposon protein, putative, unclassified, expressed
LOC_Os09g33690Os.46223.1.S1_s_at11/119+19894746..19903996retrotransposon protein, putative, unclassified, expressed
LOC_Os09g33690OsAffx.15220.2.S1_s_at8/119+19894746..19903996retrotransposon protein, putative, unclassified, expressed
LOC_Os09g33690OsAffx.15220.1.S1_s_at7/119+19894746..19903996retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30127.1.S1_at--213--1491Chr09:19874352..19874376 (25 bp)
AGCAAGGCCAGCACAGTCAGGGCCA
LOC_Os09g33650
OsAffx.30127.1.S1_at--743--2131Chr09:19874364..19874388 (25 bp)
ACAGTCAGGGCCAGGCTCCTCATCG
LOC_Os09g33650
OsAffx.30127.1.S1_at--234--3811Chr09:19874397..19874421 (25 bp)
CTCCGCCGAAGGATGGCCATGATCG
LOC_Os09g33650
OsAffx.30127.1.S1_at--332--711Chr09:19874415..19874439 (25 bp)
ATGATCGGCGCCATATCGCACCGGA
LOC_Os09g33650
OsAffx.30127.1.S1_at--825--10151Chr09:19874428..19874452 (25 bp)
TATCGCACCGGATCCATGCTCTGAT
LOC_Os09g33650
OsAffx.30127.1.S1_at--122--892Chr09:19874467..19874491 (25 bp)
AGGCCAGGGTGGACTACTACCACAA
LOC_Os09g33650
OsAffx.30127.1.S1_at--983--2191Chr09:19874494..19874518 (25 bp)
ACAAGAACCATGACGGCAACAAGGC
LOC_Os09g33650
OsAffx.30127.1.S1_at--26--5151Chr09:19874509..19874533 (25 bp)
GCAACAAGGCCCTCGTGATGCGAAA
LOC_Os09g33650
OsAffx.30127.1.S1_at--679--8411Chr09:19874516..19874540 (25 bp)
GGCCCTCGTGATGCGAAAGGTTGTA
LOC_Os09g33650
OsAffx.30127.1.S1_at--663--5572Chr09:19874530..19874554 (25 bp)
GAAAGGTTGTAGTCCATGATGAGAT
LOC_Os09g33650
OsAffx.30127.1.S1_at--349--7991Chr09:19874839..19874863 (25 bp)
GGATGAGCCGGAGCGTTTAGACTTT
LOC_Os09g33650
Target Sequence 
AGCAAGGCCAGCACAGTCAGGGCCAGGCTCCTCATCGTCGCCTCCCTCCGCCGAAGGATGGCCATGATCGGCGCCATATC
GCACCGGATCCATGCTCTGATAGTGGAGAAGGAGAAGGCCAGGGTGGACTACTACCACAAGAACAAGAACCATGACGGCA
ACAAGGCCCTCGTGATGCGAAAGGTTGTAGTCCATGATGAGATGGAGGATTCGCAGTCGGATGAGCCGGAGCGTTTAGAC
TTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30127.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis