Browse Element(s) Details


Os.17003.1.S1_at

Description gb:AK059629.1
DB_XREF= gi:32969647
TID=Os.17003.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17003 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative nuclear transport receptor (OSJNBa0026O12.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-031-A01, full insert sequence.
FL= gb:AK102336.1 gb:AK059629.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3377011/11Importin-beta N-terminal domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g33760Os.39129.1.S1_at11/1110+17519698..17521964NAC-domain containing protein 21/22, putative, expressed
LOC_Os10g33770Os.17003.1.S1_at11/1110+17528819..17543487Importin-beta N-terminal domain containing protein
LOC_Os10g33770Os.17003.1.S2_at11/1110+17528819..17543487Importin-beta N-terminal domain containing protein
LOC_Os10g33770Os.20018.1.S1_a_at1/1110+17528819..17543487Importin-beta N-terminal domain containing protein
LOC_Os10g33774Os.23116.1.A1_s_at1/1110+17544028..17548076NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os10g33780NANA10+17559108..17559722hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17003.1.S1_at--331--5231Chr10:17535742..17535766 (25 bp)
GAATTTGACATTTCCTCCATGACAT
LOC_Os10g33770
Os.17003.1.S1_at--721--3551Chr10:17535781..17535805 (25 bp)
CATCTTATGCGTAACCTGACCGATA
LOC_Os10g33770
Os.17003.1.S1_at--364--4971Chr10:17535885..17535909 (25 bp)
GCATCATATGGATCTGAGGTCTCAA
LOC_Os10g33770
Os.17003.1.S1_at--1039--9031Chr10:17535934..17535958 (25 bp)
TGCAGCTATTTCGTCAACCTTTTGA
LOC_Os10g33770
Os.17003.1.S1_at--407--9551Chr10:17535962..17536077 (25 bp)
TCTTGTTTCTCTGGTAAGTTTCCGA
LOC_Os10g33770
Os.17003.1.S1_at--704--1231Chr10:17536077..17536101 (25 bp)
AGTTGAATATCCTGAGCTCTACCAC
LOC_Os10g33770
Os.17003.1.S1_at--643--4751Chr10:17536092..17536116 (25 bp)
GCTCTACCACACCTTTTCGGAGGAA
LOC_Os10g33770
Os.17003.1.S1_at--523--2051Chr10:17536255..17536279 (25 bp)
ACTTGACGCAACTGATGTTCTTGGA
LOC_Os10g33770
Os.17003.1.S1_at--505--6731Chr10:17536271..17536295 (25 bp)
GTTCTTGGAGGTGATCCGACGCTGA
LOC_Os10g33770
Os.17003.1.S1_at--570--6211Chr10:17537592..17537616 (25 bp)
GAGGCTGCGCTGTTCTGTATACAAG
LOC_Os10g33770
Os.17003.1.S1_at--1053--2651Chr10:17537614..17537638 (25 bp)
AAGCCATTGCTAAGTCAGTCTCAGT
LOC_Os10g33770
Target Sequence 
GAATTTGACATTTCCTCCATGACATTTAATTTCTGGCATCATCTTATGCGTAACCTGACCGATAGGGGTTCNTACGCATC
ATATGGATCTGAGGTCTCAATCAACACTGAGAGGAATAGAAGATTGCAGCTATTTCGTCAACCTTTTGAAATTCTTGTTT
CTCTGGTAAGTTTCCGAGTTGAATATCCTGAGCTCTACCACACCTTTTCGGAGGAAGACCAAAGGGATTTCAGACATTCC
AGATATGCGGNTAGTGATGTATTACTTGACGCAACTGATGTTCTTGGAGGTGATCCGACGCTGAAAATACTTTTCACGAA
GCTGATTCAGGCATGTGGAAATGGACAGAACCAAAAATGGCAGCCTGTCGAGGCTGCGCTGTTCTGTATACAAGCCATTG
CTAAGTCAGTCTCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17003.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis