Browse Element(s) Details


Os.17003.1.S2_at

Description gb:AK102336.1
DB_XREF= gi:32987545
TID=Os.17003.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17003 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative nuclear transport receptor (OSJNBa0026O12.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033091A14, full insert sequence.
FL= gb:AK102336.1 gb:AK059629.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3377011/11Importin-beta N-terminal domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g33760Os.39129.1.S1_at11/1110+17519698..17521964NAC-domain containing protein 21/22, putative, expressed
LOC_Os10g33770Os.17003.1.S1_at11/1110+17528819..17543487Importin-beta N-terminal domain containing protein
LOC_Os10g33770Os.17003.1.S2_at11/1110+17528819..17543487Importin-beta N-terminal domain containing protein
LOC_Os10g33770Os.20018.1.S1_a_at1/1110+17528819..17543487Importin-beta N-terminal domain containing protein
LOC_Os10g33774Os.23116.1.A1_s_at1/1110+17544028..17548076NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os10g33780NANA10+17559108..17559722hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17003.1.S2_at--840--3551Chr10:17542590..17542614 (25 bp)
CATCATCAGGATCTAGTCTTGGTTC
LOC_Os10g33770
Os.17003.1.S2_at--925--9071Chr10:17542687..17542711 (25 bp)
TGCTTTGCGGCCACATGATTTATCC
LOC_Os10g33770
Os.17003.1.S2_at--820--2091Chr10:17542699..17542723 (25 bp)
ACATGATTTATCCTTCACGGTTGCC
LOC_Os10g33770
Os.17003.1.S2_at--167--5851Chr10:17542758..17542782 (25 bp)
GACCAACTGAAAGTCCATGGCGGTT
LOC_Os10g33770
Os.17003.1.S2_at--895--851Chr10:17542774..17542798 (25 bp)
ATGGCGGTTCATCTTTAGTCAGTGT
LOC_Os10g33770
Os.17003.1.S2_at--1130--7111Chr10:17542791..17542815 (25 bp)
GTCAGTGTTGGTTTATGCCTCCACA
LOC_Os10g33770
Os.17003.1.S2_at--118--6691Chr10:17542855..17542879 (25 bp)
GTTGCGGCACCATACTGTTCAGATT
LOC_Os10g33770
Os.17003.1.S2_at--188--6891Chr10:17542925..17542949 (25 bp)
GTATTTCGTCGTCACTGTACATGTT
LOC_Os10g33770
Os.17003.1.S2_at--376--2171Chr10:17543029..17543053 (25 bp)
ACACGGATGGTGATCTGCCTTTGGG
LOC_Os10g33770
Os.17003.1.S2_at--547--7851Chr10:17543044..17543068 (25 bp)
TGCCTTTGGGCCTGATTTTTCAACG
LOC_Os10g33770
Os.17003.1.S2_at--1111--4471Chr10:17543069..17543093 (25 bp)
GCCGGCCAGCTTCTATCAATTTAGA
LOC_Os10g33770
Target Sequence 
CATCATCAGGATCTAGTCTTGGTTCCATAACAGATAGATTTGCAGAAATCTCAGAAGTTTGTAGAAGGAACAAAACTGTG
CAAGACATAGTTCAAGGTGCTTTGCGGCCACATGATTTATCCTTCACGGTTGCCCCCCCGCCATTGTGAGAACAGGACGT
TTATACAAGACCAACTGAAAGTCCATGGCGGTTCATCTTTAGTCAGTGTTGGTTTATGCCTCCACAGCTTCTTTGGATCT
TTTTTTCTACTTCATACAGGTTTGAGTTGCGGCACCATACTGTTCAGATTTGTTCAGAGGATAGATAGGTTAGTGGTGGT
CACTGTAATTCTTTTGTATTTCGTCGTCACTGTACATGTTCCATGCATTGTGTATCTGGGAGGAAAGTTGTGTTGTATTA
TGTCAAAAACGAGGTGGGTATACATCACTGGGGGAGATCACACGGATGGTGATCTGCCTTTGGGCCTGATTTTTCAACGG
CCGGCCAGCTTCTATCAATTTAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17003.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis