Browse Element(s) Details


Os.17036.1.S1_x_at

Description gb:AK106429.1
DB_XREF= gi:32991638
TID=Os.17036.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17036 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-103-C01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-103-C01, full insert sequence.
FL= gb:AK106429.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0362011/11protein kinase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g03590NANA5+1500101..1500665expressed protein
LOC_Os05g03600Os.52896.1.S1_at8/115+1501873..1507476retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g03600OsAffx.20135.1.S1_x_at1/115+1501873..1507476retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g03610Os.2243.1.S1_a_at11/115+1513750..1519597phospholipase C, putative, expressed
LOC_Os05g03620Os.17036.1.S1_x_at11/115+1525459..1528042protein kinase family protein, putative, expressed
LOC_Os05g03630Os.6218.1.S1_at11/115+1531649..1535273DnaJ domain containing protein, expressed
LOC_Os05g03640Os.52646.1.S1_at11/115+1540010..1546187oxidoreductase, 2OG-Fe oxygenase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0005886cellular_componentplasma membrane
GO:0009986cellular_componentcell surface
GO:0030139cellular_componentendocytic vesicle
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
GO:0019199molecular_functiontransmembrane receptor protein kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17036.1.S1_x_at--248--8191Chr05:1527506..1527530 (25 bp)
GGAAGCGCGCCATCTTCAAGGAGGC
LOC_Os05g03620
Os.17036.1.S1_x_at--390--1671Chr05:1527541..1527565 (25 bp)
AGCCCCGTCAGCGTGGTGGACTACG
LOC_Os05g03620
Os.17036.1.S1_x_at--436--9331Chr05:1527581..1527605 (25 bp)
TCGCCGGCGAGCTCAGCAAGGTGCT
LOC_Os05g03620
Os.17036.1.S1_x_at--886--1611Chr05:1527653..1527677 (25 bp)
AGCTGGTCGCCTACACGGCGGTGCA
LOC_Os05g03620
Os.17036.1.S1_x_at--23--6231Chr05:1527711..1527735 (25 bp)
GATGGCGGACATCGTGGCCAACCTC
LOC_Os05g03620
Os.17036.1.S1_x_at--660--51Chr05:1527851..1527875 (25 bp)
ATTGATTGAGATTAGTAGCTTCCCT
LOC_Os05g03620
Os.17036.1.S1_x_at--999--3291Chr05:1527894..1527918 (25 bp)
CAAATTGTGATTAGCCCCGGAAGGA
LOC_Os05g03620
Os.17036.1.S1_x_at--1097--3111Chr05:1527927..1527951 (25 bp)
AATTTGTTGCTTCACTTCATTTTTT
LOC_Os05g03620
Os.17036.1.S1_x_at--599--5491Chr05:1527960..1527984 (25 bp)
GAACATCATTTGTGTGATTCTCTCA
LOC_Os05g03620
Os.17036.1.S1_x_at--558--7411Chr05:1527973..1527997 (25 bp)
GTGATTCTCTCACACATTTTGTTCA
LOC_Os05g03620
Os.17036.1.S1_x_at--924--2071Chr05:1527986..1528010 (25 bp)
ACATTTTGTTCATGGTGGCTGTACA
LOC_Os05g03620
Target Sequence 
GGAAGCGCGCCATCTTCAAGGAGGCCGAGGGCGGGAGCCCCGTCAGCGTGGTGGACTACGCCGTCCCCAGCATCGTCGCC
GGCGAGCTCAGCAAGGTGCTCGACGCCCGCGCGCCGGAGCCGAGCGCGCACGAGGCCGAGGCCGTCGAGCTGGTCGCCTA
CACGGCGGTGCACTGCGTCCGGCTGGAGGGGAAGGACCGGCCGGCGATGGCGGACATCGTGGCCAACCTCGAGACGGCGG
TGGCGCTCTGCGAGGACAGCGCCACCGGCGGCGGCGCCGCCGGCCATGGCAACAGCTCGTCCAGCGCCAGCCTCTCCATC
ACGTCCATGGAGTTNGAGTAGGATGGATTGATTGAGATTAGTAGCTTCCCTAATTCNAATCCAGAGTTTCAAATTGTGAT
TAGCCCCGGAAGGAGATTTTAAAATTTGTTGCTTCACTTCATTTTTTTTAGAGGAGAACATCATTTGTGTGATTCTCTCA
CACATTTTGTTCATGGTGGCTGTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17036.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis