Browse Element(s) Details


Os.2243.1.S1_a_at

Description gb:AK064924.1
DB_XREF= gi:32974942
TID=Os.2243.1
CNT=17
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.2243 (NCBI UniGene Cluster)
UG_TITLE=Clone LS101 50S ribosomal protein L5 (rpl5) mRNA, nuclear gene encoding chloroplast protein, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000N15, full insert sequence.
FL= gb:AK064924.1 gb:AK119748.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0361011/11phospholipase C, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g03560NANA5+1489075..1489401hypothetical protein
LOC_Os05g03574Os.27032.1.S2_at11/115+1493598..1498743expressed protein
LOC_Os05g03574Os.27032.1.S1_at11/115+1493598..1498743expressed protein
LOC_Os05g03590NANA5+1500101..1500665expressed protein
LOC_Os05g03600Os.52896.1.S1_at8/115+1501873..1507476retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g03600OsAffx.20135.1.S1_x_at1/115+1501873..1507476retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g03610Os.2243.1.S1_a_at11/115+1513750..1519597phospholipase C, putative, expressed
LOC_Os05g03620Os.17036.1.S1_x_at11/115+1525459..1528042protein kinase family protein, putative, expressed
LOC_Os05g03630Os.6218.1.S1_at11/115+1531649..1535273DnaJ domain containing protein, expressed
LOC_Os05g03640Os.52646.1.S1_at11/115+1540010..1546187oxidoreductase, 2OG-Fe oxygenase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006629biological_processlipid metabolism
GO:0007165biological_processsignal transduction
GO:0007242biological_processintracellular signaling cascade
GO:0004435molecular_functionphosphoinositide phospholipase C activity
GO:0004629molecular_functionphospholipase C activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2243.1.S1_a_at--713--2791Chr05:1519012..1519036 (25 bp)
AAGATGGACACGTGGATTCCGGCAT
LOC_Os05g03610
Os.2243.1.S1_a_at--560--7911Chr05:1519025..1519049 (25 bp)
GGATTCCGGCATGGGATCACGAGTT
LOC_Os05g03610
Os.2243.1.S1_a_at--1118--6431Chr05:1519039..1519063 (25 bp)
GATCACGAGTTCGAGTTCCCGTTGA
LOC_Os05g03610
Os.2243.1.S1_a_at--761--1211Chr05:1519052..1519076 (25 bp)
AGTTCCCGTTGAGCGTGCCGGAGCT
LOC_Os05g03610
Os.2243.1.S1_a_at--515--8551Chr05:1519091..1519115 (25 bp)
TGGAGGTGCACGAGTCCGACAACCA
LOC_Os05g03610
Os.2243.1.S1_a_at--195--4231Chr05:1519106..1519130 (25 bp)
CCGACAACCACCAGAAGGACGACTT
LOC_Os05g03610
Os.2243.1.S1_a_at--262--6211Chr05:1519169..1519193 (25 bp)
GAGGCATCCGCTCCGTCAGGCTCTG
LOC_Os05g03610
Os.2243.1.S1_a_at--134--611Chr05:1519234..1519258 (25 bp)
ATGCGCTTCGACTTCACCTGACTAC
LOC_Os05g03610
Os.2243.1.S1_a_at--331--3511Chr05:1519276..1519300 (25 bp)
CATCGTCATCGTCTTAGTAGTAGTA
LOC_Os05g03610
Os.2243.1.S1_a_at--1028--9252Chr05:1519347..1519371 (25 bp)
TCCGTCCCGAAATATAGCAATGTAG
LOC_Os05g03610
Os.2243.1.S1_a_at--543--6851Chr05:1519427..1519451 (25 bp)
GTTTGCTATGTTTTAGGACGAATAT
LOC_Os05g03610
Target Sequence 
AAGATGGACACGTGGATTCCGGCATGGGATCACGAGTTCGAGTTCCCGTTGAGCGTGCCGGAGCTGGCGCTGCTCCGGGT
GGAGGTGCACGAGTCCGACAACCACCAGAAGGACGACTTCGGCGGGCAGACCTGCCTGCCGGTGTGGGAGCTCCGGCGAG
GCATCCGCTCCGTCAGGCTCTGCGACCACCGCGGCGAGCCCCTCCGCTCCGTCAAGCTCCTCATGCGCTTCGACTTCACC
TGACTACTCCATCTTCTTCTTCATCATCGTCATCGTCTTAGTAGTAGTAGTTCCATGTATGATATCATGAGNGATGAAGC
ATTGATCGTACTTTNTCCGTCCCGAAATATAGCAATGTAGGATTAGATGGAAACATCTTAATACTANGAATCTGGATATG
TNCTATCTGNTTCTGGTTTGCTATGTTTTAGGACGAATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2243.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis