Browse Element(s) Details


Os.52646.1.S1_at

Description gb:AK068517.1
DB_XREF= gi:32978535
TID=Os.52646.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52646 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013154G13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013154G13, full insert sequence.
FL= gb:AK068517.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0364011/11oxidoreductase, 2OG-Fe oxygenase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g03610Os.2243.1.S1_a_at11/115+1513750..1519597phospholipase C, putative, expressed
LOC_Os05g03620Os.17036.1.S1_x_at11/115+1525459..1528042protein kinase family protein, putative, expressed
LOC_Os05g03630Os.6218.1.S1_at11/115+1531649..1535273DnaJ domain containing protein, expressed
LOC_Os05g03640Os.52646.1.S1_at11/115+1540010..1546187oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os05g03650OsAffx.22894.1.S1_at1/115+1554217..1560557retrotransposon protein, putative, unclassified
LOC_Os05g03650OsAffx.22927.1.S1_x_at1/115+1554217..1560557retrotransposon protein, putative, unclassified
LOC_Os05g03650OsAffx.3347.1.S1_at1/115+1554217..1560557retrotransposon protein, putative, unclassified
LOC_Os05g03650Os.46610.1.A1_x_at1/115+1554217..1560557retrotransposon protein, putative, unclassified
LOC_Os05g03650OsAffx.20380.1.S1_at1/115+1554217..1560557retrotransposon protein, putative, unclassified
LOC_Os05g03650OsAffx.22927.2.S1_x_at1/115+1554217..1560557retrotransposon protein, putative, unclassified
LOC_Os05g03650OsAffx.20380.1.S1_x_at1/115+1554217..1560557retrotransposon protein, putative, unclassified
LOC_Os05g03650OsAffx.28492.1.S1_at1/115+1554217..1560557retrotransposon protein, putative, unclassified
LOC_Os05g03660OsAffx.21171.3.S1_x_at3/115+1561384..1563591retrotransposon protein, putative, unclassified
LOC_Os05g03660OsAffx.21171.4.S1_x_at2/115+1561384..1563591retrotransposon protein, putative, unclassified
LOC_Os05g03660OsAffx.21171.4.S1_at2/115+1561384..1563591retrotransposon protein, putative, unclassified
LOC_Os05g03670NANA5+1567452..1574119retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0009813biological_processflavonoid biosynthesis
GO:0010261biological_processorgan senescence (sensu Magnoliophyta)
GO:0016682molecular_functionoxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
GO:0016706molecular_functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52646.1.S1_at--279--1831Chr05:1544519..1544543 (25 bp)
ACGCCGGTGCATGGGTCACCGTTGA
LOC_Os05g03640
Os.52646.1.S1_at--1032--3251Chr05:1544471..1544494 (24 bp)
CAACGTCGGCGACCAAATTCAGGTG
LOC_Os05g03640
Os.52646.1.S1_at--1037--7751Chr05:1540499..1540523 (25 bp)
GGTGACGAACGCATTGTACCGGAGC
LOC_Os05g03640
Os.52646.1.S1_at--550--8731Chr05:1540350..1540374 (25 bp)
TGTACAGCCCCATGACCTTCGACGA
LOC_Os05g03640
Os.52646.1.S1_at--1120--3096Chr11:20710017..20710036 (20 bp)
AATACCTAATTCTACTACCACCACT
NONE
Os.52646.1.S1_at--596--3732Chr02:31762673..31762765 (25 bp)
CTACTACCACCACTCAATAATATCA
NONE
Os.52646.1.S1_at--514--10491Chr05:1540126..1540150 (25 bp)
TTAATATGGACATGCTAGCTAGCTA
LOC_Os05g03640
Os.52646.1.S1_at--661--1571Chr05:1540106..1540130 (25 bp)
AGCTACTAGCTATATGTGCAGGCAT
LOC_Os05g03640
Os.52646.1.S1_at--610--2831Chr05:1540060..1540084 (25 bp)
AAGTTTGTTGCGATCTGCAATTGAT
LOC_Os05g03640
Os.52646.1.S1_at--652--3831Chr05:1540046..1540070 (25 bp)
CTGCAATTGATTGTCTTGTCATCGT
LOC_Os05g03640
Os.52646.1.S1_at--439--10811Chr05:1540031..1540055 (25 bp)
TTGTCATCGTCGGTTCTCGATCAAA
LOC_Os05g03640
Target Sequence 
ACGCCGGTGCATGGGTCACCGTTGACCCCGTGCNCTGACGCCTTCATCATCAACGTCGGCGACCAAATTCAGGTGGTGAC
GAACGCATTGTACCGGAGCGTGGAGCACCGGGTGGTGGTGAACGCGGCGGAGGAGCGGCTGTCGATCGCGACCTTCTACA
ACCCTCGGAGCGACCTGCCGGTGGCGCCGCTGCCGGAGCTCGTGTCGCCGGAGCNNNNNCCGCTGTACAGCCCCATGACC
TTCGACGACTACCGCCTCTACATCCGCCGCAACGGCCCCCGCGGCAAGTCCCAGGTCGATCGCCTCGCCGCCGCCGCCGC
CACAATACCTAATTCTACTACCACCACTCAATAATATCATCATCATCATCATCTCCGGCCATCGCCGCCGTCGCCGGCCG
TCGCCGTGTATGATTCATAATTAGTTAGCTGATTAGTAATAAATTAATTAATATGGACATGCTAGCTAGCTACTAGCTAT
ATGTGCAGGCATGTGATGAAATGGAATTGATTTAAGTTTGTTGCGATCTGCAATTGATTGTCTTGTCATCGTCGGTTCTC
GATCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52646.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis