Browse Element(s) Details


Os.6218.1.S1_at

Description gb:AK069823.1
DB_XREF= gi:32979847
TID=Os.6218.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6218 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023029N24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023029N24, full insert sequence.
FL= gb:AK069823.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0363011/11DnaJ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g03600Os.52896.1.S1_at8/115+1501873..1507476retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g03600OsAffx.20135.1.S1_x_at1/115+1501873..1507476retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g03610Os.2243.1.S1_a_at11/115+1513750..1519597phospholipase C, putative, expressed
LOC_Os05g03620Os.17036.1.S1_x_at11/115+1525459..1528042protein kinase family protein, putative, expressed
LOC_Os05g03630Os.6218.1.S1_at11/115+1531649..1535273DnaJ domain containing protein, expressed
LOC_Os05g03640Os.52646.1.S1_at11/115+1540010..1546187oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os05g03650OsAffx.22894.1.S1_at1/115+1554217..1560557retrotransposon protein, putative, unclassified
LOC_Os05g03650OsAffx.22927.1.S1_x_at1/115+1554217..1560557retrotransposon protein, putative, unclassified
LOC_Os05g03650OsAffx.3347.1.S1_at1/115+1554217..1560557retrotransposon protein, putative, unclassified
LOC_Os05g03650Os.46610.1.A1_x_at1/115+1554217..1560557retrotransposon protein, putative, unclassified
LOC_Os05g03650OsAffx.20380.1.S1_at1/115+1554217..1560557retrotransposon protein, putative, unclassified
LOC_Os05g03650OsAffx.22927.2.S1_x_at1/115+1554217..1560557retrotransposon protein, putative, unclassified
LOC_Os05g03650OsAffx.20380.1.S1_x_at1/115+1554217..1560557retrotransposon protein, putative, unclassified
LOC_Os05g03650OsAffx.28492.1.S1_at1/115+1554217..1560557retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6218.1.S1_at--481--5971Chr05:1534729..1534753 (25 bp)
GAGAAGCCTAACATCATACCATCAG
LOC_Os05g03630
Os.6218.1.S1_at--810--2771Chr05:1534772..1534796 (25 bp)
AAGAGCGGTCGCACGCTAGATTCAA
LOC_Os05g03630
Os.6218.1.S1_at--238--191Chr05:1534816..1534840 (25 bp)
ATTTACACGCATAGGATCTCGCTCG
LOC_Os05g03630
Os.6218.1.S1_at--331--8291Chr05:1534845..1534869 (25 bp)
GGCTTTGACCGGTTGCACAGTCCAA
LOC_Os05g03630
Os.6218.1.S1_at--602--2551Chr05:1534868..1534892 (25 bp)
AACTGACAACTCTGGATGGGCGGAA
LOC_Os05g03630
Os.6218.1.S1_at--1068--10451Chr05:1534894..1534918 (25 bp)
TTAACCGTTCCAGTGAAGTCCGTCA
LOC_Os05g03630
Os.6218.1.S1_at--514--7351Chr05:1534906..1534930 (25 bp)
GTGAAGTCCGTCATCAATCCTACTT
LOC_Os05g03630
Os.6218.1.S1_at--1046--9611Chr05:1535000..1535024 (25 bp)
TCAGGTTTCAGATCAAGTTCCCCAC
LOC_Os05g03630
Os.6218.1.S1_at--72--1171Chr05:1535045..1535069 (25 bp)
AGTCAGGGATCCAGCAACTTTTGCC
LOC_Os05g03630
Os.6218.1.S1_at--97--5151Chr05:1535058..1535082 (25 bp)
GCAACTTTTGCCTAAGCCTTAACTG
LOC_Os05g03630
Os.6218.1.S1_at--399--7031Chr05:1535167..1535191 (25 bp)
GTACAATCACTGCTTCGGTGCAAGT
LOC_Os05g03630
Target Sequence 
GAGAAGCCTAACATCATACCATCAGACCTAGTGTTTATAATAGAAGAGCGGTCGCACGCTAGATTCAAGCGAGACAAGGA
TGATCTTATTTACACGCATAGGATCTCGCTCGTGGAGGCTTTGACCGGTTGCACAGTCCAACTGACAACTCTGGATGGGC
GGAATTTAACCGTTCCAGTGAAGTCCGTCATCAATCCTACTTCTGAAGAGGTTGTGAAGGGCGAAGGGATGCCAATCACA
AAGGAACCGTCTAAGAAAGGGGATCTGAAGATCAGGTTTCAGATCAAGTTCCCCACCAATCTAACGTCTGACCAAAAGTC
AGGGATCCAGCAACTTTTGCCTAAGCCTTAACTGGTAGTACAATATTGTGAACCTGTATTTAGTCGTTTGTTTTAGCAGT
TGGGAATACATTGAGAGGGTTTGATCACAGTTGCTGAATGTACAATCACTGCTTCGGTGCAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6218.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis