Browse Element(s) Details


Os.27032.1.S1_at

Description gb:AK067404.1
DB_XREF= gi:32977422
TID=Os.27032.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27032 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033084B10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013106F19, full insert sequence.
FL= gb:AK067404.1 gb:AK102104.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0357411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g03520OsAffx.14526.1.S1_at11/115+1467821..1469065hypothetical protein
LOC_Os05g03530Os.37285.1.S1_at11/115+1472002..1474581Tetraspanin family protein, expressed
LOC_Os05g03530Os.16146.1.S1_s_at10/115+1472002..1474581Tetraspanin family protein, expressed
LOC_Os05g03540Os.4606.1.S1_at11/115+1475961..1477672expressed protein
LOC_Os05g03550Os.10447.1.S1_at11/115+1479094..1485865Myb-like DNA-binding domain containing protein, expressed
LOC_Os05g03550Os.53062.1.S2_at11/115+1479094..1485865Myb-like DNA-binding domain containing protein, expressed
LOC_Os05g03550Os.53062.1.S1_at11/115+1479094..1485865Myb-like DNA-binding domain containing protein, expressed
LOC_Os05g03560NANA5+1489075..1489401hypothetical protein
LOC_Os05g03574Os.27032.1.S2_at11/115+1493598..1498743expressed protein
LOC_Os05g03574Os.27032.1.S1_at11/115+1493598..1498743expressed protein
LOC_Os05g03590NANA5+1500101..1500665expressed protein
LOC_Os05g03600Os.52896.1.S1_at8/115+1501873..1507476retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g03600OsAffx.20135.1.S1_x_at1/115+1501873..1507476retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g03610Os.2243.1.S1_a_at11/115+1513750..1519597phospholipase C, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27032.1.S1_at--285--10551Chr05:1496511..1496535 (25 bp)
TTCTTCACCACTCCTTAATATTACT
LOC_Os05g03574
Os.27032.1.S1_at--306--151Chr05:1496530..1496554 (25 bp)
ATTACTGTGTGTCGTGGTGGCATTT
LOC_Os05g03574
Os.27032.1.S1_at--820--4951Chr05:1496549..1496573 (25 bp)
GCATTTGTCTAATCCATCATTCCAG
LOC_Os05g03574
Os.27032.1.S1_at--189--10091Chr05:1496634..1496658 (25 bp)
TAGGAAGCCCCACAACTAGAGCACT
LOC_Os05g03574
Os.27032.1.S1_at--85--6551Chr05:1496731..1496755 (25 bp)
GATTTTCTTGCGCATACACTGATAC
LOC_Os05g03574
Os.27032.1.S1_at--764--2151Chr05:1496756..1496780 (25 bp)
ACAGCTTTAGCCTCATTTCTCAAAG
LOC_Os05g03574
Os.27032.1.S1_at--609--3331Chr05:1496793..1496817 (25 bp)
CACTCCTCACAGCTTCAGATTTTAT
LOC_Os05g03574
Os.27032.1.S1_at--107--6551Chr05:1496810..1496834 (25 bp)
GATTTTATGGTTTTGCCTCTCTGCA
LOC_Os05g03574
Os.27032.1.S1_at--843--9511Chr05:1496827..1496851 (25 bp)
TCTCTGCAATCTTTCCTTGAGTACC
LOC_Os05g03574
Os.27032.1.S1_at--254--211Chr05:1496989..1497013 (25 bp)
ATTTGCCTTTCGTTCATGCTTGACA
LOC_Os05g03574
Os.27032.1.S1_at--1067--4871Chr05:1497042..1497066 (25 bp)
GCTTTGTTCTGGCAAGTTCATCTAT
LOC_Os05g03574
Target Sequence 
TTCTTCACCACTCCTTAATATTACTGTGTGTCGTGGTGGCATTTGTCTAATCCATCATTCCAGCTTGGTGACACTAAACA
TCTTGAGCATAATTTGGTGAGCTTGTAACGGAGGCTGCTAGACTAGGAAGCCCCACAACTAGAGCACTCATTTTTTTCCC
GATAGAAGTATATATACATGATTTGTTAGTCTTTTTCAGTGGATACACCAATAACATTAAGATTTTCTTGCGCATACACT
GATACACAGCTTTAGCCTCATTTCTCAAAGGTTGACCTTCAGCACTCCTCACAGCTTCAGATTTTATGGTTTTGCCTCTC
TGCAATCTTTCCTTGAGTACCCCTGCCCCCTGAGCATTTGACTTAATTTAAAGCTAGTATCTTTTTTGGCAGGTTACAAG
TTGGTTGATGCATCTACTAATGCGTATAACAATATTCCTTGTCGGTTTAACAGTTCTTTTTCTGCAAATAGAGCAAGCAT
TTGCCTTTCGTTCATGCTTGACAAGCACAGATATCAACATTGAATTGACCAGCTTTGTTCTGGCAAGTTCATCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27032.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis