Browse Element(s) Details


Os.37285.1.S1_at

Description gb:AK059541.1
DB_XREF= gi:32969559
TID=Os.37285.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37285 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-029-E11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-029-E11, full insert sequence.
FL= gb:AK059541.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0353011/11Tetraspanin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g03480Os.28409.20.A1_a_at11/115+1441203..1452108Isovaleryl-CoA dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os05g03480Os.38599.3.S1_a_at11/115+1441203..1452108Isovaleryl-CoA dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os05g03480Os.47660.1.S1_s_at11/115+1441203..1452108Isovaleryl-CoA dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os05g03490Os.51826.1.S1_at11/115+1453312..1455686expressed protein
LOC_Os05g03490Os.40207.1.A1_s_at11/115+1453312..1455686expressed protein
LOC_Os05g03500OsAffx.26716.1.S1_at11/115+1456097..1460716expressed protein
LOC_Os05g03500OsAffx.24223.1.S1_x_at2/115+1456097..1460716expressed protein
LOC_Os05g03510OsAffx.26717.1.S1_at11/115+1462680..1463396hypothetical protein
LOC_Os05g03520OsAffx.14526.1.S1_at11/115+1467821..1469065hypothetical protein
LOC_Os05g03530Os.37285.1.S1_at11/115+1472002..1474581Tetraspanin family protein, expressed
LOC_Os05g03530Os.16146.1.S1_s_at10/115+1472002..1474581Tetraspanin family protein, expressed
LOC_Os05g03540Os.4606.1.S1_at11/115+1475961..1477672expressed protein
LOC_Os05g03550Os.10447.1.S1_at11/115+1479094..1485865Myb-like DNA-binding domain containing protein, expressed
LOC_Os05g03550Os.53062.1.S2_at11/115+1479094..1485865Myb-like DNA-binding domain containing protein, expressed
LOC_Os05g03550Os.53062.1.S1_at11/115+1479094..1485865Myb-like DNA-binding domain containing protein, expressed
LOC_Os05g03560NANA5+1489075..1489401hypothetical protein
LOC_Os05g03574Os.27032.1.S2_at11/115+1493598..1498743expressed protein
LOC_Os05g03574Os.27032.1.S1_at11/115+1493598..1498743expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0007568biological_processaging
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37285.1.S1_at--367--2011Chr05:1474469..1474493 (25 bp)
ACTCTCTGGGTTTTCATATGTACAT
LOC_Os05g03530
Os.37285.1.S1_at--1095--7671Chr05:1474476..1474500 (25 bp)
GGGTTTTCATATGTACATCTTCCTT
LOC_Os05g03530
Os.37285.1.S1_at--523--271Chr05:1474484..1474508 (25 bp)
ATATGTACATCTTCCTTCAGTGCGA
LOC_Os05g03530
Os.37285.1.S1_at--467--751Chr05:1474486..1474510 (25 bp)
ATGTACATCTTCCTTCAGTGCGAAT
LOC_Os05g03530
Os.37285.1.S1_at--397--7011Chr05:1474488..1474512 (25 bp)
GTACATCTTCCTTCAGTGCGAATAA
LOC_Os05g03530
Os.37285.1.S1_at--986--3551Chr05:1474491..1474515 (25 bp)
CATCTTCCTTCAGTGCGAATAATTA
LOC_Os05g03530
Os.37285.1.S1_at--851--7291Chr05:1474503..1474527 (25 bp)
GTGCGAATAATTAAGCTGTTGTACA
LOC_Os05g03530
Os.37285.1.S1_at--499--9791Chr05:1474514..1474538 (25 bp)
TAAGCTGTTGTACATATTTGGGAAA
LOC_Os05g03530
Os.37285.1.S1_at--1091--191Chr05:1474529..1474553 (25 bp)
ATTTGGGAAATGCAAAGTAGCACTC
LOC_Os05g03530
Os.37285.1.S1_at--503--5131Chr05:1474540..1474564 (25 bp)
GCAAAGTAGCACTCAGCAGATGATA
LOC_Os05g03530
Os.37285.1.S1_at--91--1191Chr05:1474544..1474568 (25 bp)
AGTAGCACTCAGCAGATGATAAAGC
LOC_Os05g03530
Target Sequence 
ACTCTCTGGGTTTTCATATGTACATCTTCCTTCAGTGCGAATAATTAAGCTGTTGTACATATTTGGGAAATGCAAAGTAG
CACTCAGCAGATGATAAAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37285.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis