Browse Element(s) Details


Os.51826.1.S1_at

Description gb:AK063902.1
DB_XREF= gi:32973920
TID=Os.51826.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51826 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033115D18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-122-H07, full insert sequence.
FL= gb:AK102952.1 gb:AK063902.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0349011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g03450Os.48037.1.A1_x_at11/115+1432746..1435269Protein kinase domain containing protein, expressed
LOC_Os05g03450Os.48037.1.A1_at11/115+1432746..1435269Protein kinase domain containing protein, expressed
LOC_Os05g03460OsAffx.14525.1.S1_at11/115+1439388..1441806Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os05g03480Os.28409.20.A1_a_at11/115+1441203..1452108Isovaleryl-CoA dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os05g03480Os.38599.3.S1_a_at11/115+1441203..1452108Isovaleryl-CoA dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os05g03480Os.47660.1.S1_s_at11/115+1441203..1452108Isovaleryl-CoA dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os05g03490Os.51826.1.S1_at11/115+1453312..1455686expressed protein
LOC_Os05g03490Os.40207.1.A1_s_at11/115+1453312..1455686expressed protein
LOC_Os05g03500OsAffx.26716.1.S1_at11/115+1456097..1460716expressed protein
LOC_Os05g03500OsAffx.24223.1.S1_x_at2/115+1456097..1460716expressed protein
LOC_Os05g03510OsAffx.26717.1.S1_at11/115+1462680..1463396hypothetical protein
LOC_Os05g03520OsAffx.14526.1.S1_at11/115+1467821..1469065hypothetical protein
LOC_Os05g03530Os.37285.1.S1_at11/115+1472002..1474581Tetraspanin family protein, expressed
LOC_Os05g03530Os.16146.1.S1_s_at10/115+1472002..1474581Tetraspanin family protein, expressed
LOC_Os05g03540Os.4606.1.S1_at11/115+1475961..1477672expressed protein
LOC_Os05g03550Os.10447.1.S1_at11/115+1479094..1485865Myb-like DNA-binding domain containing protein, expressed
LOC_Os05g03550Os.53062.1.S2_at11/115+1479094..1485865Myb-like DNA-binding domain containing protein, expressed
LOC_Os05g03550Os.53062.1.S1_at11/115+1479094..1485865Myb-like DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51826.1.S1_at--841--6431Chr05:1455094..1455118 (25 bp)
GATCAGACCATTGCTGTCTTTAGTG
LOC_Os05g03490
Os.51826.1.S1_at--1--7491Chr05:1455119..1455143 (25 bp)
GTGTGGAAGTGCTGCCTGATGACAA
LOC_Os05g03490
Os.51826.1.S1_at--351--3871Chr05:1455134..1455158 (25 bp)
CTGATGACAACAAGGCTGCGGGCAA
LOC_Os05g03490
Os.51826.1.S1_at--527--5511Chr05:1455218..1455242 (25 bp)
GAAAATGCACATTCATCGAACAAAT
LOC_Os05g03490
Os.51826.1.S1_at--116--3291Chr05:1455238..1455262 (25 bp)
CAAATCAACAACGTCGAGTCGGTGC
LOC_Os05g03490
Os.51826.1.S1_at--577--7191Chr05:1455255..1455279 (25 bp)
GTCGGTGCTCTAAAGCTTGGGTGAT
LOC_Os05g03490
Os.51826.1.S1_at--680--6551Chr05:1455277..1455301 (25 bp)
GATTAGCTCTTGAAATCTCCTGCCT
LOC_Os05g03490
Os.51826.1.S1_at--893--10751Chr05:1455286..1455310 (25 bp)
TTGAAATCTCCTGCCTTCTGCTACT
LOC_Os05g03490
Os.51826.1.S1_at--505--4751Chr05:1455495..1455519 (25 bp)
GCTGAATTGTCTGAAATACCCCTGA
LOC_Os05g03490
Os.51826.1.S1_at--621--6951Chr05:1455521..1455545 (25 bp)
GTAGATGGTGGTCCTGATCTCTTGT
LOC_Os05g03490
Os.51826.1.S1_at--716--7791Chr05:1455530..1455554 (25 bp)
GGTCCTGATCTCTTGTTAATTATTT
LOC_Os05g03490
Target Sequence 
GATCAGACCATTGCTGTCTTTAGTGGTGTGGAAGTGCTGCCTGATGACAACAAGGCTGCGGGCAATGGCAAAGGGAAAGG
CAAACAGAATGCCAAGGGGCTCCGTATGATCAAACACAAGTCCAGAAAATGCACATTCATCGAACAAATCAACAACGTCG
AGTCGGTGCTCTAAAGCTTGGGTGATTAGCTCTTGAAATCTCCTGCCTTCTGCTACTGCTTTTAGTTGGCTGCAATGGAC
TAGTGGAACTTGGCTAGGTGGTGTTCCTGCTGACTTTAAGGGCCTGTTTGGGGGAGCTGGAGAGAGCTGGAGATTCTGAG
AAGCTAGCTGGAGATTCTGAGAAGCTGAGGAGGGTCTGTTTGGGGGAGCTTCTTTAGGTTTGTTGGCTGGTGAGCTGAGA
GGCTGAATTGTCTGAAATACCCCTGAGGTAGATGGTGGTCCTGATCTCTTGTTAATTATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51826.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis