Browse Element(s) Details


Os.48037.1.A1_at

Description gb:AK120637.1
DB_XREF= gi:37990260
TID=Os.48037.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.48037 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013153K02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013153K02, full insert sequence.
FL= gb:AK120637.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0345011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g03430Os.4647.1.S1_at11/115+1404955..1416491Sumoylation ligase E3, putative, expressed
LOC_Os05g03430Os.18396.1.S1_at1/115+1404955..1416491Sumoylation ligase E3, putative, expressed
LOC_Os05g03440NANA5+1419297..1420454hypothetical protein
LOC_Os05g03450Os.48037.1.A1_x_at11/115+1432746..1435269Protein kinase domain containing protein, expressed
LOC_Os05g03450Os.48037.1.A1_at11/115+1432746..1435269Protein kinase domain containing protein, expressed
LOC_Os05g03460OsAffx.14525.1.S1_at11/115+1439388..1441806Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os05g03480Os.28409.20.A1_a_at11/115+1441203..1452108Isovaleryl-CoA dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os05g03480Os.38599.3.S1_a_at11/115+1441203..1452108Isovaleryl-CoA dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os05g03480Os.47660.1.S1_s_at11/115+1441203..1452108Isovaleryl-CoA dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os05g03490Os.51826.1.S1_at11/115+1453312..1455686expressed protein
LOC_Os05g03490Os.40207.1.A1_s_at11/115+1453312..1455686expressed protein
LOC_Os05g03500OsAffx.26716.1.S1_at11/115+1456097..1460716expressed protein
LOC_Os05g03500OsAffx.24223.1.S1_x_at2/115+1456097..1460716expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48037.1.A1_at--735--7211Chr05:1434866..1434890 (25 bp)
GTCGATGAGCTTCTCGGCGAACCAC
LOC_Os05g03450
Os.48037.1.A1_at--1023--1671Chr05:1434903..1434927 (25 bp)
AGCCTGCAGGACAGCGTGTCCGACT
LOC_Os05g03450
Os.48037.1.A1_at--479--9051Chr05:1434907..1434931 (25 bp)
TGCAGGACAGCGTGTCCGACTACAA
LOC_Os05g03450
Os.48037.1.A1_at--34--5791Chr05:1434957..1434981 (25 bp)
GACGACTCCTCGTCGGACTCGCTCA
LOC_Os05g03450
Os.48037.1.A1_at--473--9671Chr05:1434994..1435018 (25 bp)
TCACCAGCACGCTGCGCAAGGGCGG
LOC_Os05g03450
Os.48037.1.A1_at--547--4071Chr05:1435055..1435079 (25 bp)
CGACGCCGCCCGGTGAATTTTACTG
LOC_Os05g03450
Os.48037.1.A1_at--927--7071Chr05:1435132..1435156 (25 bp)
GTAATTTTCTCTCCAATTGTATGTA
LOC_Os05g03450
Os.48037.1.A1_at--65--10391Chr05:1435136..1435160 (25 bp)
TTTTCTCTCCAATTGTATGTATATG
LOC_Os05g03450
Os.48037.1.A1_at--798--3771Chr05:1435140..1435164 (25 bp)
CTCTCCAATTGTATGTATATGTATT
LOC_Os05g03450
Os.48037.1.A1_at--139--7031Chr05:1435167..1435191 (25 bp)
GTACATAGATTAGCATTGAGCTCAA
LOC_Os05g03450
Os.48037.1.A1_at--421--3811Chr05:1435208..1435232 (25 bp)
CTCCTACTTACTTATCTTGATAATT
LOC_Os05g03450
Target Sequence 
GTCGATGAGCTTCTCGGCGAACCACCAGCTGCTGCTGAGCCTGCAGGACAGCGTGTCCGACTACAACGCGCTGGGCCTCA
ACGACCTCTCCGACGACTCCTCGTCGGACTCGCTCAGCTCCTCCTCGCTCACCAGCACGCTGCGCAAGGGCGGCCACGAC
ATCGCCNCCTTCAGCTCCGCCGCCGCCGGCGACGCCGCCCGGTGAATTTTACTGNCTTGTTTTTCTCTCTCTCTCTCTCT
CTTAATCCTACTAGATNCTAGTGGTGGTAATTTTCTCTCCAATTGTATGTATATGTATTGAGTACATAGATTAGCATTGA
GCTCAAAANTCNATTTGTAATACTCCTACTTACTTATCTTGATAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48037.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis