Browse Element(s) Details


OsAffx.14525.1.S1_at

Description tigr:9633.m00271
TID=OsAffx.14525.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=protein kinase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0346011/11Serine/threonine-protein kinase RLCKVII, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g03430Os.4647.1.S1_at11/115+1404955..1416491Sumoylation ligase E3, putative, expressed
LOC_Os05g03430Os.18396.1.S1_at1/115+1404955..1416491Sumoylation ligase E3, putative, expressed
LOC_Os05g03440NANA5+1419297..1420454hypothetical protein
LOC_Os05g03450Os.48037.1.A1_x_at11/115+1432746..1435269Protein kinase domain containing protein, expressed
LOC_Os05g03450Os.48037.1.A1_at11/115+1432746..1435269Protein kinase domain containing protein, expressed
LOC_Os05g03460OsAffx.14525.1.S1_at11/115+1439388..1441806Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os05g03480Os.28409.20.A1_a_at11/115+1441203..1452108Isovaleryl-CoA dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os05g03480Os.38599.3.S1_a_at11/115+1441203..1452108Isovaleryl-CoA dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os05g03480Os.47660.1.S1_s_at11/115+1441203..1452108Isovaleryl-CoA dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os05g03490Os.51826.1.S1_at11/115+1453312..1455686expressed protein
LOC_Os05g03490Os.40207.1.A1_s_at11/115+1453312..1455686expressed protein
LOC_Os05g03500OsAffx.26716.1.S1_at11/115+1456097..1460716expressed protein
LOC_Os05g03500OsAffx.24223.1.S1_x_at2/115+1456097..1460716expressed protein
LOC_Os05g03510OsAffx.26717.1.S1_at11/115+1462680..1463396hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009816biological_processdefense response to pathogenic bacteria, incompatible interaction
GO:0005792cellular_componentmicrosome
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14525.1.S1_at--288--5611Chr05:1441022..1441046 (25 bp)
GACAAACATGTCTCAACTAGGGTGA
LOC_Os05g03460
OsAffx.14525.1.S1_at--923--911Chr05:1441087..1441111 (25 bp)
AGGCATGCTAAGTACCAAGACTGAT
LOC_Os05g03460
OsAffx.14525.1.S1_at--819--2771Chr05:1441156..1441180 (25 bp)
AAGAGCTGTGGATACCTGCAGACCA
LOC_Os05g03460
OsAffx.14525.1.S1_at--75--4291Chr05:1441170..1441194 (25 bp)
CCTGCAGACCAGTTTGTGAACAAAT
LOC_Os05g03460
OsAffx.14525.1.S1_at--1037--7331Chr05:1441185..1441208 (24 bp)
GTGAACAAATCCTGGCTTACTGGGC
LOC_Os05g03460
OsAffx.14525.1.S1_at--1118--4391Chr05:1441396..1441420 (25 bp)
GCCAAACCCATGCTTCATGATCGGA
LOC_Os05g03460
OsAffx.14525.1.S1_at--1078--6971Chr05:1441425..1441449 (25 bp)
GTACCATGAGCTGGTAGACCCTCTT
LOC_Os05g03460
OsAffx.14525.1.S1_at--1075--1251Chr05:1441473..1441497 (25 bp)
AGATTTTAACCAAGCTGCGGCCGTG
LOC_Os05g03460
OsAffx.14525.1.S1_at--643--3791Chr05:1441570..1441594 (25 bp)
CTCGCAGAAGTACCCGCAGGTTGTG
LOC_Os05g03460
OsAffx.14525.1.S1_at--1126--6151Chr05:1441599..1441623 (25 bp)
GAGGATTAACGCTGAACCCCAGAAC
LOC_Os05g03460
OsAffx.14525.1.S1_at--931--10751Chr05:1441679..1441703 (25 bp)
TTGACCGTCAACGAGCAGTTGCTGA
LOC_Os05g03460
Target Sequence 
GACAAACATGTCTCAACTAGGGTGATGGGCACATTTGGGTACTGTGCTCCAGAATACGTAAGAACAGGCATGCTAAGTAC
CAAGACTGATGTCTATAGTTTTGGGGTTTTTCTACTTGAGTTGATCACAGGAAGAAGAGCTGTGGATACCTGCAGACCAG
TTTGTGAACAAATCCTGGCTTACTGGGCCAAACCCATGCTTCATGATCGGAGGAGGTACCATGAGCTGGTAGACCCTCTT
CTTAGAGGTGACTATCCAGACAAAGATTTTAACCAAGCTGCGGCCGTGGCAGCGATATGCATAGAAGATGAAGCCTCAGT
TCGGCCATATATGAGTGACATTGTTGTTGCATTGGGATTCCTCGCAGAAGTACCCGCAGGTTGTGAAGAGAGGATTAACG
CTGAACCCCAGAACAGAAAGGATGAAGATCCTTCAGTAACTGGTAACACCAAGAAAGATCAAAGCACATTTGACCGTCAA
CGAGCAGTTGCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14525.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis