Browse Element(s) Details


OsAffx.26716.1.S1_at

Description tigr:9633.m00275
TID=OsAffx.26716.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0350011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g03450Os.48037.1.A1_x_at11/115+1432746..1435269Protein kinase domain containing protein, expressed
LOC_Os05g03450Os.48037.1.A1_at11/115+1432746..1435269Protein kinase domain containing protein, expressed
LOC_Os05g03460OsAffx.14525.1.S1_at11/115+1439388..1441806Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os05g03480Os.28409.20.A1_a_at11/115+1441203..1452108Isovaleryl-CoA dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os05g03480Os.38599.3.S1_a_at11/115+1441203..1452108Isovaleryl-CoA dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os05g03480Os.47660.1.S1_s_at11/115+1441203..1452108Isovaleryl-CoA dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os05g03490Os.51826.1.S1_at11/115+1453312..1455686expressed protein
LOC_Os05g03490Os.40207.1.A1_s_at11/115+1453312..1455686expressed protein
LOC_Os05g03500OsAffx.26716.1.S1_at11/115+1456097..1460716expressed protein
LOC_Os05g03500OsAffx.24223.1.S1_x_at2/115+1456097..1460716expressed protein
LOC_Os05g03510OsAffx.26717.1.S1_at11/115+1462680..1463396hypothetical protein
LOC_Os05g03520OsAffx.14526.1.S1_at11/115+1467821..1469065hypothetical protein
LOC_Os05g03530Os.37285.1.S1_at11/115+1472002..1474581Tetraspanin family protein, expressed
LOC_Os05g03530Os.16146.1.S1_s_at10/115+1472002..1474581Tetraspanin family protein, expressed
LOC_Os05g03540Os.4606.1.S1_at11/115+1475961..1477672expressed protein
LOC_Os05g03550Os.10447.1.S1_at11/115+1479094..1485865Myb-like DNA-binding domain containing protein, expressed
LOC_Os05g03550Os.53062.1.S2_at11/115+1479094..1485865Myb-like DNA-binding domain containing protein, expressed
LOC_Os05g03550Os.53062.1.S1_at11/115+1479094..1485865Myb-like DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26716.1.S1_at--280--2271Chr05:1457940..1457964 (25 bp)
AAATCATCCGTGGATTTCGGCTTCC
LOC_Os05g03500
OsAffx.26716.1.S1_at--472--2272Chr02:6976248..6976272 (25 bp)
AAATCTCATCGACCATGGCCAGACT
NONE
OsAffx.26716.1.S1_at--1055--6551Chr05:1457822..1457846 (25 bp)
GATTAATTTTGATCACCTGCACTCA
LOC_Os05g03500
OsAffx.26716.1.S1_at--1018--10251Chr05:1457767..1457791 (25 bp)
TTTGTCATCTATGGCTGCAAAGCCT
LOC_Os05g03500
OsAffx.26716.1.S1_at--734--2251Chr05:1457704..1457728 (25 bp)
AAATATTGTGCCTGCTTCATCTGTT
LOC_Os05g03500
OsAffx.26716.1.S1_at--1011--6671Chr05:1457390..1457706 (25 bp)
GTTGCCCAACTCATGGAATCGGTTA
LOC_Os05g03500
OsAffx.26716.1.S1_at--270--4591Chr05:1456276..1456300 (25 bp)
GCGCATTGGGATGCATATGCTTCCA
LOC_Os05g03500
OsAffx.26716.1.S1_at--777--631Chr05:1456260..1456284 (25 bp)
ATGCTTCCAAAGTGTTCTGTGAGAT
LOC_Os05g03500
OsAffx.26716.1.S1_at--650--6071Chr05:1456190..1456214 (25 bp)
GAGTCCCCTTGGCTACAAAAACTTG
LOC_Os05g03500
OsAffx.26716.1.S1_at--620--2431Chr05:1456160..1456184 (25 bp)
AAAATTCTTTGCACAGACCGGGCGG
LOC_Os05g03500
OsAffx.26716.1.S1_at--1143--5811Chr05:1456145..1456169 (25 bp)
GACCGGGCGGCAATATGACCGTACA
LOC_Os05g03500
Target Sequence 
AAATCATCCGTGGATTTCGGCTTCCCTAGCTATCCAACAAATCTCATCGACCATGGCCAGACTTTCTTTTCCTCCAGCCG
GGAGCTTAGAGAACGAGCCATCGGAAGAGTCTGTCATGGATTAATTTTGATCACCTGCACTCACGGGATTCATTTGCACA
AGCTCAGGGTCTTTTTGTCATCTATGGCTGCAAAGCCTGAGGCTCAGATGGGAAGTGATGTTAGTTGTTCAACAAAAAAT
ATTGTGCCTGCTTCATCTGTTGCCCAACTCATGGAATCGGTTATGGCAGTTTGTAGAATATTTGGTTACCGCAACAATTT
ATTGAAGATGGAGAAAGGGAAGGTACCAAAAGCGCATTGGGATGCATATGCTTCCAAAGTGTTCTGTGAGATATGTAGGG
ATGAGGTTCTAGCAGGAAATAGACCAACAGCTGCCTTGAGTCCCCTTGGCTACAAAAACTTGGAAGAAAAATTCTTTGCA
CAGACCGGGCGGCAATATGACCGTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26716.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis