Browse Element(s) Details


Os.53062.1.S1_at

Description gb:AK070653.1
DB_XREF= gi:32980677
TID=Os.53062.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53062 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023055D14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023055D14, full insert sequence.
FL= gb:AK070653.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0355011/11Myb-like DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g03490Os.51826.1.S1_at11/115+1453312..1455686expressed protein
LOC_Os05g03490Os.40207.1.A1_s_at11/115+1453312..1455686expressed protein
LOC_Os05g03500OsAffx.26716.1.S1_at11/115+1456097..1460716expressed protein
LOC_Os05g03500OsAffx.24223.1.S1_x_at2/115+1456097..1460716expressed protein
LOC_Os05g03510OsAffx.26717.1.S1_at11/115+1462680..1463396hypothetical protein
LOC_Os05g03520OsAffx.14526.1.S1_at11/115+1467821..1469065hypothetical protein
LOC_Os05g03530Os.37285.1.S1_at11/115+1472002..1474581Tetraspanin family protein, expressed
LOC_Os05g03530Os.16146.1.S1_s_at10/115+1472002..1474581Tetraspanin family protein, expressed
LOC_Os05g03540Os.4606.1.S1_at11/115+1475961..1477672expressed protein
LOC_Os05g03550Os.10447.1.S1_at11/115+1479094..1485865Myb-like DNA-binding domain containing protein, expressed
LOC_Os05g03550Os.53062.1.S2_at11/115+1479094..1485865Myb-like DNA-binding domain containing protein, expressed
LOC_Os05g03550Os.53062.1.S1_at11/115+1479094..1485865Myb-like DNA-binding domain containing protein, expressed
LOC_Os05g03560NANA5+1489075..1489401hypothetical protein
LOC_Os05g03574Os.27032.1.S2_at11/115+1493598..1498743expressed protein
LOC_Os05g03574Os.27032.1.S1_at11/115+1493598..1498743expressed protein
LOC_Os05g03590NANA5+1500101..1500665expressed protein
LOC_Os05g03600Os.52896.1.S1_at8/115+1501873..1507476retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g03600OsAffx.20135.1.S1_x_at1/115+1501873..1507476retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53062.1.S1_at--550--8271Chr05:1481582..1481606 (25 bp)
GGCAGGCATATGTGGAACTCTCTCC
LOC_Os05g03550
Os.53062.1.S1_at--941--791Chr05:1481548..1481572 (25 bp)
ATGGGCTCATGCATTACCAGTTCTG
LOC_Os05g03550
Os.53062.1.S1_at--416--5931Chr05:1481485..1481509 (25 bp)
GAGCATCTTTTAACTCCTGAAGCAG
LOC_Os05g03550
Os.53062.1.S1_at--94--2051Chr05:1481454..1481478 (25 bp)
ACTTTGATGATGACGGCACTCTCTC
LOC_Os05g03550
Os.53062.1.S1_at--93--7951Chr05:1481345..1481369 (25 bp)
GGATTTCGCTCGAATTTCGTCATAC
LOC_Os05g03550
Os.53062.1.S1_at--312--11Chr05:1481277..1481301 (25 bp)
AGGCTCGGAAATCACTTGGTTTGGA
LOC_Os05g03550
Os.53062.1.S1_at--284--7971Chr05:1481255..1481279 (25 bp)
GGATCTGATCCATCAAGGTGCTGCT
LOC_Os05g03550
Os.53062.1.S1_at--371--8551Chr05:1481225..1481249 (25 bp)
TGGTTTCCCTACAGGTGATGCCAAT
LOC_Os05g03550
Os.53062.1.S1_at--1111--3871Chr05:1481147..1481171 (25 bp)
CTGTAGTGCACAGTCATGTCCTAAA
LOC_Os05g03550
Os.53062.1.S1_at--769--6491Chr05:1481117..1481141 (25 bp)
GATAGATGCATGTCCTGTTTCTGAT
LOC_Os05g03550
Os.53062.1.S1_at--820--8131Chr05:1481080..1481104 (25 bp)
GGACATAATCCTCTTTCTGATATTG
LOC_Os05g03550
Target Sequence 
GGCAGGCATATGTGGAACTCTCTCCCCAGAAGGCATGGGCTCATGCATTACCAGTTCTGCTGATCCTGGCCAGAAGATAG
GGATCATCTCAAGAATGGAGCATCTTTTAACTCCTGAAGCAGATAAAAACTTTGATGATGACGGCACTCTCTCAGATCAG
GAGTGTGAAGTTGACATAGTTGATTGGAATGATGATGAGAAGTCAAGTTTTATTGAGGCTATGAATAGATATGGGAAGGA
TTTCGCTCGAATTTCGTCATACGTGAAGAGCAAGTCATTTGAACAATGCAAGGTTTTTTTCAGCAAGGCTCGGAAATCAC
TTGGTTTGGATCTGATCCATCAAGGTGCTGCTGATGCTGGTTTCCCTACAGGTGATGCCAATGGAGGAAGGAGTGGTACA
GATGGAGCCTGTATTGCTGAGATGGATTCAGCTATCTGTAGTGCACAGTCATGTCCTAAAGTGGAGATAGATGCATGTCC
TGTTTCTGATGGAGAAATTCAAGGACATAATCCTCTTTCTGATATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53062.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis