Browse Element(s) Details


Os.47660.1.S1_s_at

Description gb:BM038531
DB_XREF= gi:16754152
DB_XREF=V004B11
CLONE=V004B11
TID=Os.47660.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.47660 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein pir:T47470 (A.thaliana) T47470 isovaleryl-CoA-dehydrogenase precursor
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0348011/11Isovaleryl-CoA dehydrogenase, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g03430Os.4647.1.S1_at11/115+1404955..1416491Sumoylation ligase E3, putative, expressed
LOC_Os05g03430Os.18396.1.S1_at1/115+1404955..1416491Sumoylation ligase E3, putative, expressed
LOC_Os05g03440NANA5+1419297..1420454hypothetical protein
LOC_Os05g03450Os.48037.1.A1_x_at11/115+1432746..1435269Protein kinase domain containing protein, expressed
LOC_Os05g03450Os.48037.1.A1_at11/115+1432746..1435269Protein kinase domain containing protein, expressed
LOC_Os05g03460OsAffx.14525.1.S1_at11/115+1439388..1441806Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os05g03480Os.28409.20.A1_a_at11/115+1441203..1452108Isovaleryl-CoA dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os05g03480Os.38599.3.S1_a_at11/115+1441203..1452108Isovaleryl-CoA dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os05g03480Os.47660.1.S1_s_at11/115+1441203..1452108Isovaleryl-CoA dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os05g03490Os.51826.1.S1_at11/115+1453312..1455686expressed protein
LOC_Os05g03490Os.40207.1.A1_s_at11/115+1453312..1455686expressed protein
LOC_Os05g03500OsAffx.26716.1.S1_at11/115+1456097..1460716expressed protein
LOC_Os05g03500OsAffx.24223.1.S1_x_at2/115+1456097..1460716expressed protein
LOC_Os05g03510OsAffx.26717.1.S1_at11/115+1462680..1463396hypothetical protein
LOC_Os05g03520OsAffx.14526.1.S1_at11/115+1467821..1469065hypothetical protein
LOC_Os05g03530Os.37285.1.S1_at11/115+1472002..1474581Tetraspanin family protein, expressed
LOC_Os05g03530Os.16146.1.S1_s_at10/115+1472002..1474581Tetraspanin family protein, expressed
LOC_Os05g03540Os.4606.1.S1_at11/115+1475961..1477672expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0006552biological_processleucine catabolism
GO:0006635biological_processfatty acid beta-oxidation
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0046459biological_processshort-chain fatty acid metabolism
GO:0005739cellular_componentmitochondrion
GO:0005759cellular_componentmitochondrial matrix
GO:0005777cellular_componentperoxisome
GO:0003997molecular_functionacyl-CoA oxidase activity
GO:0008470molecular_functionisovaleryl-CoA dehydrogenase activity
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47660.1.S1_s_at--359--3551Chr05:1448338..1448362 (25 bp)
CATAAATGAGTACCCAACTGGCCGA
LOC_Os05g03480
Os.47660.1.S1_s_at--941--691Chr05:1448333..1448357 (25 bp)
ATGAGTACCCAACTGGCCGATTGCT
LOC_Os05g03480
Os.47660.1.S1_s_at--241--6991Chr05:1448329..1448353 (25 bp)
GTACCCAACTGGCCGATTGCTGAGA
LOC_Os05g03480
Os.47660.1.S1_s_at--667--1531Chr05:1448240..1448264 (25 bp)
AGCTCTTCAAAGAGGAGTGAAACTA
LOC_Os05g03480
Os.47660.1.S1_s_at--25--7351Chr05:1448224..1448248 (25 bp)
GTGAAACTATTATTTTGGAAGCCAG
LOC_Os05g03480
Os.47660.1.S1_s_at--477--2532Chr03:21974143..21974365 (25 bp)
AACTATTATTTTGGAAGCCAGGTAT
NONE
Os.47660.1.S1_s_at--534--10251Chr05:1448154..1448178 (25 bp)
TTTGTACACATCGTCCCTGATGTCC
LOC_Os05g03480
Os.47660.1.S1_s_at--984--9851Chr05:1448150..1448174 (25 bp)
TACACATCGTCCCTGATGTCCTATA
LOC_Os05g03480
Os.47660.1.S1_s_at--332--3551Chr05:1448146..1448170 (25 bp)
CATCGTCCCTGATGTCCTATATCTG
LOC_Os05g03480
Os.47660.1.S1_s_at--741--10251Chr05:1448117..1448141 (25 bp)
TTTGTCCAAGATTTGTCATGACTTT
LOC_Os05g03480
Os.47660.1.S1_s_at--590--211Chr05:1448107..1448131 (25 bp)
ATTTGTCATGACTTTGTATATTTCC
LOC_Os05g03480
Target Sequence 
CATAAATGAGTACCCAACTGGCCGATTGCTGAGAGATNCAAANCTGTTTGAGATTGGANCCGGTACTAGTGAGATAAGAA
GAATGATAATTGNCCGCGAGCTCTTCAAAGAGGAGTGAAACTATTATTTTGGAAGCCAGGTATNTGATATGTATAACTTG
GGGAGGTGANCATGATTTGGACAANTTTGTACACATCGTCCCTGATGTCCTATATCTGATAATTTGTCCAAGATTTGTCA
TGACTTTGTATATTTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47660.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis