Browse Element(s) Details


Os.17042.1.S1_at

Description gb:CB660789
DB_XREF= gi:29664514
DB_XREF=OSJNEd02N21.r
CLONE=OSJNEd02N21
TID=Os.17042.1
CNT=31
FEA=FLmRNA
TIER=Stack
STK=6
UG=Os.17042 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033046F05, full insert sequence
FL= gb:AK101514.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3769011/11Coronatine-insensitive protein 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g37650OsAffx.30938.1.S1_at2/115+21955043..21955417hypothetical protein
LOC_Os05g37660Os.18463.1.S1_at11/115+21956892..21958778AER, putative, expressed
LOC_Os05g37670NANA5+21963338..21963907hypothetical protein
LOC_Os05g37680OsAffx.4548.1.S1_at11/115+21964784..21965479transposon protein, putative, unclassified
LOC_Os05g37690Os.17042.1.S1_at11/115+21977725..21980654Coronatine-insensitive protein 1, putative, expressed
LOC_Os05g37690OsAffx.16860.1.S1_at1/115+21977725..21980654Coronatine-insensitive protein 1, putative, expressed
LOC_Os05g37700Os.18881.1.S1_at11/115+21985304..21989715Glycosyl hydrolase family 3 N terminal domain containing protein, expressed
LOC_Os05g37700Os.7745.1.S1_at11/115+21985304..21989715Glycosyl hydrolase family 3 N terminal domain containing protein, expressed
LOC_Os05g37700Os.23325.1.A1_at1/115+21985304..21989715Glycosyl hydrolase family 3 N terminal domain containing protein, expressed
LOC_Os05g37710OsAffx.14998.1.S1_at10/115+21992483..21993153hypothetical protein
LOC_Os05g37720OsAffx.4549.1.S1_at10/115+21993561..21996895hypothetical protein
LOC_Os05g37730Os.18392.1.S1_at11/115+21998191..22000281MYB-like transcription factor DIVARICATA, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0006952biological_processdefense response
GO:0009625biological_processresponse to insect
GO:0009861biological_processjasmonic acid and ethylene-dependent systemic resistance
GO:0009867biological_processjasmonic acid mediated signaling pathway
GO:0045014biological_processnegative regulation of transcription by glucose
GO:0004842molecular_functionubiquitin-protein ligase activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17042.1.S1_at--66--6311Chr05:21979888..21979912 (25 bp)
GATGATGGTCTGATCCGGTTTGCAT
LOC_Os05g37690
Os.17042.1.S1_at--324--10131Chr05:21979992..21980016 (25 bp)
TATGCCTTCCCTGAGATACGTGTGG
LOC_Os05g37690
Os.17042.1.S1_at--476--7691Chr05:21980015..21980039 (25 bp)
GGGTACAGGGCTACAAGGCTTCTAA
LOC_Os05g37690
Os.17042.1.S1_at--392--9791Chr05:21980037..21980061 (25 bp)
TAAGACTGGTCACGATCTCATGCTC
LOC_Os05g37690
Os.17042.1.S1_at--273--10331Chr05:21980089..21980113 (25 bp)
TTTACACCTCCCAGTTCTGAGAATG
LOC_Os05g37690
Os.17042.1.S1_at--149--1571Chr05:21980157..21980181 (25 bp)
AGCTCAGATACTTGCATACTACTCC
LOC_Os05g37690
Os.17042.1.S1_at--347--1891Chr05:21980208..21980232 (25 bp)
ACGATCTGTGGTTCCTTTGTATCCT
LOC_Os05g37690
Os.17042.1.S1_at--714--271Chr05:21980251..21980275 (25 bp)
ATATGGTATCTCTCTGCTTCGTTCT
LOC_Os05g37690
Os.17042.1.S1_at--167--4451Chr05:21980277..21980301 (25 bp)
GCCTCTTGCCTTTTTTGGGTGATAT
LOC_Os05g37690
Os.17042.1.S1_at--1093--8291Chr05:21980341..21980365 (25 bp)
GGCTAGCTGCTATGTACCGTAATAA
LOC_Os05g37690
Os.17042.1.S1_at--202--10211Chr05:21980403..21980427 (25 bp)
TATTTCCCACTCTACTACTATCTAA
LOC_Os05g37690
Target Sequence 
GATGATGGTCTGATCCGGTTTGCATTGGGGTGTGAGAACCTGCGGAAGCTTGAGCTAAGGAGTTGTTGCTTCAGTGAGCA
AGCTTTAGCCNGCGCTATACGGAGTATGCCTTCCCTGAGATACGTGTGGGTACAGGGCTACAAGGCTTCTAAGACTGGTC
ACGATCTCATGCTCATGGCCAGGCCCTTCTGGAACATAGAGTTTACACCTCCCAGTTCTGAGAATGCAAATCGAATGAGN
GAAGATGGTGAACCTTGTGTAGATAGTCAAGCTCAGATACTTGCATACTACTCCCTTGCCGGGAAGAGGTCGGACTGCCC
ACGATCTGTGGTTCCTTTGTATCCTGCGTGACTGTAAATACCGATATGGTATCTCTCTGCTTCGTTCTTGCCTCTTGCCT
TTTTTGGGTGATATGTTGATATGTGGTTATTGTATGGGTCTAGAACTCTAGATGGCTAGCTGCTATGTACCGTAATAAGC
TACTGGTAGCTGAGATGTACTGGAATAAGCACTTCTATTTCCCACTCTACTACTATCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17042.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis