Browse Element(s) Details


Os.17045.1.S1_s_at

Description gb:BI813523
DB_XREF= gi:16579428
DB_XREF=K012F01
CLONE=K012F01
TID=Os.17045.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.17045 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4513011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g45110NANA11+26790809..26791417hypothetical protein
LOC_Os11g45120NANA11+26801402..26803020hypothetical protein
LOC_Os11g45130OsAffx.19382.1.S1_at11/1111+26812135..26817326NB-ARC domain containing protein, expressed
LOC_Os11g45130Os.17045.1.S1_s_at11/1111+26812135..26817326NB-ARC domain containing protein, expressed
LOC_Os11g45140OsAffx.31484.1.S1_at11/1111+26818923..26819838hypothetical protein
LOC_Os11g45140OsAffx.18095.1.S1_x_at1/1111+26818923..26819838hypothetical protein
LOC_Os11g45150OsAffx.19383.1.S1_x_at11/1111+26822765..26822965hypothetical protein
LOC_Os11g45160OsAffx.19384.1.S1_at11/1111+26828407..26830573NB-ARC domain containing protein
LOC_Os11g45160OsAffx.19384.1.S1_x_at11/1111+26828407..26830573NB-ARC domain containing protein
LOC_Os11g45160OsAffx.7416.1.S1_at1/1111+26828407..26830573NB-ARC domain containing protein
LOC_Os11g45170NANA11+26830928..26831605hypothetical protein
LOC_Os11g45180Os.13019.1.S1_at3/1111+26835221..26838316NB-ARC domain containing protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17045.1.S1_s_at--477--4411Chr11:26814934..26814958 (25 bp)
GCCACCAGTTTGAAAGAGCTCTCCC
LOC_Os11g45130
Os.17045.1.S1_s_at--1115--2331Chr11:26814946..26814970 (25 bp)
AAAGAGCTCTCCCTTGTAGCAGCAA
LOC_Os11g45130
Os.17045.1.S1_s_at--212--1491Chr11:26814966..26814990 (25 bp)
AGCAAGCTGCTTGAAGTCGGTGAAG
LOC_Os11g45130
Os.17045.1.S1_s_at--936--5291Chr11:26814987..26815011 (25 bp)
GAAGGACCTTCCATCCCTATCTGGT
LOC_Os11g45130
Os.17045.1.S1_s_at--24--491Chr11:26815005..26815029 (25 bp)
ATCTGGTTTCCTTTCTGTTTGTAGA
LOC_Os11g45130
Os.17045.1.S1_s_at--23--5571Chr11:26815070..26815094 (25 bp)
GAAAGCTGTTTGTAAGTGTTTGTCC
LOC_Os11g45130
Os.17045.1.S1_s_at--892--5931Chr11:26815129..26815153 (25 bp)
GAGCAGCTATGGTTGGATGTGAATA
LOC_Os11g45130
Os.17045.1.S1_s_at--868--8011Chr11:26815155..26815179 (25 bp)
GGAGGACTCATCACCGTGGGTGCAT
LOC_Os11g45130
Os.17045.1.S1_s_at--474--391Chr11:26815164..26815188 (25 bp)
ATCACCGTGGGTGCATGGGCTTCGA
LOC_Os11g45130
Os.17045.1.S1_s_at--270--711Chr11:26815178..26815202 (25 bp)
ATGGGCTTCGAGAGCAGTACCGCCA
LOC_Os11g45130
Os.17045.1.S1_s_at--459--1511Chr11:26815190..26815214 (25 bp)
AGCAGTACCGCCACCTGGATGTCTA
LOC_Os11g45130
Target Sequence 
GCCACCAGTTTGAAAGAGCTCTCCCTTGTAGCAGCAAGCTGCTTGAAGTCGGTGAAGGACCTTCCATCCCTATCTGGTTT
CCTTTCTGTTTGTAGATGTGAAGGCCTGGAGAGGGTTACAGAACTTCCCAAGTGAGAAAGCTGTTTGTAAGTGTTTGTCC
CAATTTGAGCTGTGTTGAGGAGTTAGGCACGTTTGGAGCAGCTATGGTTGGATGTGAATATGGAGGACTCATCACCGTGG
GTGCATGGGCTTCGAGAGCAGTACCGCCACCTGGATGTCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17045.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis