Browse Element(s) Details


OsAffx.7416.1.S1_at

Description tigr:9639.m04185
TID=OsAffx.7416.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4507011/11hypothetical protein
LOC_Os11g451601/11NB-ARC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g45020Os.13019.1.S1_at1/1111+26743855..26745783hypothetical protein
LOC_Os11g45030OsAffx.24840.1.S1_at1/1111+26747006..26747227hypothetical protein
LOC_Os11g45040NANA11+26751716..26753593hypothetical protein
LOC_Os11g45050Os.26915.1.A1_at2/1111+26754286..26757387NB-ARC domain containing protein, expressed
LOC_Os11g45060Os.4123.1.S1_s_at2/1111+26762779..26766541NB-ARC domain containing protein
LOC_Os11g45060Os.27841.1.S1_at1/1111+26762779..26766541NB-ARC domain containing protein
LOC_Os11g45070OsAffx.7416.1.S1_at11/1111+26769073..26769535hypothetical protein
LOC_Os11g45080OsAffx.7417.1.S1_at11/1111+26772860..26774505hypothetical protein
LOC_Os11g45090Os.4123.1.S1_s_at5/1111+26775425..26778238NB-ARC domain containing protein
LOC_Os11g45100OsAffx.24562.1.S1_at5/1111+26782996..26783271hypothetical protein
LOC_Os11g45110NANA11+26790809..26791417hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7416.1.S1_at--886--531Chr11:26769106..26769130 (25 bp)
ATCCGGGTAGGAATGGGCGAGTTCA
LOC_Os11g45070
OsAffx.7416.1.S1_at--561--4071Chr11:26769123..26769147 (25 bp)
CGAGTTCAAGTCGTTGTGTCACGCA
LOC_Os11g45070
OsAffx.7416.1.S1_at--463--3211Chr11:26769129..26769153 (25 bp)
CAAGTCGTTGTGTCACGCAGGGTTC
LOC_Os11g45070
OsAffx.7416.1.S1_at--113--6631Chr11:26769135..26769159 (25 bp)
GTTGTGTCACGCAGGGTTCTTCTTC
LOC_Os11g45070
OsAffx.7416.1.S1_at--1104--9551Chr11:26769152..26769176 (25 bp)
TCTTCTTCCCCGAGGCGAAGATCAA
LOC_Os11g45070
OsAffx.7416.1.S1_at--167--4051Chr11:26769200..26769224 (25 bp)
CGATTAAGGTCGTCGAAAGCGAGAC
LOC_Os11g45070
OsAffx.7416.1.S1_at--765--2351Chr11:26769215..26769239 (25 bp)
AAAGCGAGACGCTCGGCAGCGCTAC
LOC_Os11g45070
OsAffx.7416.1.S1_at--236--3791Chr11:26769226..26769250 (25 bp)
CTCGGCAGCGCTACCTATGGTAAGA
LOC_Os11g45070
OsAffx.7416.1.S1_at--762--6411Chr11:26769258..26769282 (25 bp)
GATCTTACAATCGAATTCAGGGCGT
LOC_Os11g45070
OsAffx.7416.1.S1_at--712--111Chr11:26769272..26769495 (25 bp)
ATTCAGGGCGTTCAGGTTCTGCAAC
LOC_Os11g45070
OsAffx.7416.1.S1_at--400--6753Chr11:26769483..26769504 (22 bp)
GTTCAGGTTCTGCAACTTCCATGCA
LOC_Os11g45070
Target Sequence 
ATCCGGGTAGGAATGGGCGAGTTCAAGTCGTTGTGTCACGCAGGGTTCTTCTTCCCCGAGGCGAAGATCAAGGGACACTG
GAAGTGGAGCAAGACGATTAAGGTCGTCGAAAGCGAGACGCTCGGCAGCGCTACCTATGGTAAGAATAGGAAGATCTTAC
AATCGAATTCAGGGCGTTCAGGTTCTGCAACTTCCATGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7416.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis