Browse Element(s) Details


Os.4123.1.S1_s_at

Description gb:BQ907226
DB_XREF= gi:22306004
DB_XREF=N005E12
CLONE=N005E12
TID=Os.4123.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.4123 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:S71195 (A.thaliana) S71195 myosin heavy chain homolog - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g450905/11NB-ARC domain containing protein
LOC_Os11g449904/11NB-ARC domain containing protein, expressed
LOC_Os11g451902/11NB-ARC domain containing protein
LOC_Os11g450602/11NB-ARC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g45040NANA11+26751716..26753593hypothetical protein
LOC_Os11g45050Os.26915.1.A1_at2/1111+26754286..26757387NB-ARC domain containing protein, expressed
LOC_Os11g45060Os.4123.1.S1_s_at2/1111+26762779..26766541NB-ARC domain containing protein
LOC_Os11g45060Os.27841.1.S1_at1/1111+26762779..26766541NB-ARC domain containing protein
LOC_Os11g45070OsAffx.7416.1.S1_at11/1111+26769073..26769535hypothetical protein
LOC_Os11g45080OsAffx.7417.1.S1_at11/1111+26772860..26774505hypothetical protein
LOC_Os11g45090Os.4123.1.S1_s_at5/1111+26775425..26778238NB-ARC domain containing protein
LOC_Os11g45100OsAffx.24562.1.S1_at5/1111+26782996..26783271hypothetical protein
LOC_Os11g45110NANA11+26790809..26791417hypothetical protein
LOC_Os11g45120NANA11+26801402..26803020hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4123.1.S1_s_at--1059--6831NONE
GTTTCTCAGGACTACACCCCAGTCT
NONE
Os.4123.1.S1_s_at--593--7411NONE
GTGTTGGATGATCTATGGCATTCCG
NONE
Os.4123.1.S1_s_at--658--8551NONE
TGGATGATCTATGGCATTCCGATGT
NONE
Os.4123.1.S1_s_at--932--8271NONE
GGCATTCCGATGTATGGACCAATCT
NONE
Os.4123.1.S1_s_at--753--6911Chr11:26776280..26776304 (25 bp)
GTATGGACCAATCTACTACGAACTC
LOC_Os11g45090
Os.4123.1.S1_s_at--853--9051Chr11:26776308..26776332 (25 bp)
TGCATGCTGCAACCTCAGGAATAAT
LOC_Os11g45090
Os.4123.1.S1_s_at--1132--9091Chr11:26776312..26776336 (25 bp)
TGCTGCAACCTCAGGAATAATTTTG
LOC_Os11g45090
Os.4123.1.S1_s_at--65--5152Chr11:26776326..26776350 (25 bp)
GAATAATTTTGATAACTACTCGGCA
LOC_Os11g45090
Os.4123.1.S1_s_at--1088--152Chr11:26776331..26776355 (25 bp)
ATTTTGATAACTACTCGGCAAGATA
LOC_Os11g45090
Os.4123.1.S1_s_at--212--10733Chr11:26844385..26844409 (25 bp)
TTGTTCAGAAATGTGGTGGGCTACC
LOC_Os11g45190
Os.4123.1.S1_s_at--947--10513Chr11:26844388..26844412 (25 bp)
TTCAGAAATGTGGTGGGCTACCTCT
LOC_Os11g45190
Target Sequence 
GTTTCTCAGGACTACACCCCAGTCTCTGNTTTTGAAACAACTACTTAGAACNATGGAGGTTCAACATGCACNAAGAAGAA
TCAGTTGGAGAGCTCCAAAGCAAGCTTGAATCAGCTATTAAAGACAAGAGTTTTTTCCTTGTGTTGGATGATCTATGGCA
TTCCGATGTATGGACCAATCTACTACGAACTCCACTGCATGCTGCAACCTCAGGAATAATTTTGATAACTACTCGGCAAG
ATACTATCGCTAGAGAAATTGGGGTTGAGGAACCACATCGTGTCGACCTAATGTCACCAGCTGTTGGCTGGGAGCTACTA
TGGAAGAGCATGTAGCATTCAGGACGAGAAAGAAGTGCAAATCTGCGAGACATAGGGATCGAAATTGTTCAGAAATGTGG
TGGGCTACCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4123.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis