Browse Element(s) Details


Os.26915.1.A1_at

Description gb:CB966702
DB_XREF= gi:30228812
DB_XREF=NL41_B08
CLONE=NL41_B08
TID=Os.26915.1
CNT=5
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.26915 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g450502/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g44970OsAffx.19384.2.S1_at11/1111+26727392..26730453NB-ARC domain containing protein
LOC_Os11g44970OsAffx.19384.1.S1_x_at6/1111+26727392..26730453NB-ARC domain containing protein
LOC_Os11g44980NANA11+26731217..26731837hypothetical protein
LOC_Os11g44990Os.4123.1.S1_s_at4/1111+26735263..26738354NB-ARC domain containing protein, expressed
LOC_Os11g45000NANA11+26738748..26741615retrotransposon protein, putative, unclassified
LOC_Os11g45010NANA11+26741799..26743553retrotransposon protein, putative, unclassified
LOC_Os11g45020Os.13019.1.S1_at1/1111+26743855..26745783hypothetical protein
LOC_Os11g45030OsAffx.24840.1.S1_at1/1111+26747006..26747227hypothetical protein
LOC_Os11g45040NANA11+26751716..26753593hypothetical protein
LOC_Os11g45050Os.26915.1.A1_at2/1111+26754286..26757387NB-ARC domain containing protein, expressed
LOC_Os11g45060Os.4123.1.S1_s_at2/1111+26762779..26766541NB-ARC domain containing protein
LOC_Os11g45060Os.27841.1.S1_at1/1111+26762779..26766541NB-ARC domain containing protein
LOC_Os11g45070OsAffx.7416.1.S1_at11/1111+26769073..26769535hypothetical protein
LOC_Os11g45080OsAffx.7417.1.S1_at11/1111+26772860..26774505hypothetical protein
LOC_Os11g45090Os.4123.1.S1_s_at5/1111+26775425..26778238NB-ARC domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26915.1.A1_at--818--1351NONE
AGAGAGCTGCGTGTAAATGTCTGCC
NONE
Os.26915.1.A1_at--750--1371NONE
AGAGCTGCGTGTAAATGTCTGCCCC
NONE
Os.26915.1.A1_at--1127--5891NONE
GAGCTGCGTGTAAATGTCTGCCCCA
NONE
Os.26915.1.A1_at--52--1611NONE
AGCTGCGTGTAAATGTCTGCCCCAA
NONE
Os.26915.1.A1_at--1074--4751NONE
GCTGCGTGTAAATGTCTGCCCCAAT
NONE
Os.26915.1.A1_at--63--9151NONE
TGCGTGTAAATGTCTGCCCCAATTT
NONE
Os.26915.1.A1_at--840--4651Chr11:26757218..26757237 (20 bp)
GCGTGTAAATGTCTGCCCCAATTTG
LOC_Os11g45050
Os.26915.1.A1_at--332--3991Chr11:26757218..26757238 (21 bp)
CGTGTAAATGTCTGCCCCAATTTGA
LOC_Os11g45050
Os.26915.1.A1_at--1144--8731NONE
TGTAAATGTCTGCCCCAATTTGAGG
NONE
Os.26915.1.A1_at--222--5811Chr11:26757388..26757412 (25 bp)
GACCCAATTAATTTAGATGGCGCAA
NONE
Os.26915.1.A1_at--198--10451NONE
TTAGATGGCGCAAGGTTGCTAATCT
NONE
Target Sequence 
AGAGAGCTGCGTGTAAATGTCTGCCCCAATTTGAGGCATGTTGAGGAGTTGGGTGGTTTGGAGCAGCTATTGCTGGATGA
AGGTATGCAGGAGATCTCTCAGCTGTGGGTCCCTGGGCTTCAGGAGCAACACCGCCAGCTCCATGGAGATGAGCATGAGC
TGGAGGTCATCGAGTGGCTGTGAGACCCAATTAATTTAGATGGCGCAAGGTTGCTAATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26915.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis