Browse Element(s) Details


OsAffx.7417.1.S1_at

Description tigr:9639.m04186
TID=OsAffx.7417.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4508011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g45040NANA11+26751716..26753593hypothetical protein
LOC_Os11g45050Os.26915.1.A1_at2/1111+26754286..26757387NB-ARC domain containing protein, expressed
LOC_Os11g45060Os.4123.1.S1_s_at2/1111+26762779..26766541NB-ARC domain containing protein
LOC_Os11g45060Os.27841.1.S1_at1/1111+26762779..26766541NB-ARC domain containing protein
LOC_Os11g45070OsAffx.7416.1.S1_at11/1111+26769073..26769535hypothetical protein
LOC_Os11g45080OsAffx.7417.1.S1_at11/1111+26772860..26774505hypothetical protein
LOC_Os11g45090Os.4123.1.S1_s_at5/1111+26775425..26778238NB-ARC domain containing protein
LOC_Os11g45100OsAffx.24562.1.S1_at5/1111+26782996..26783271hypothetical protein
LOC_Os11g45110NANA11+26790809..26791417hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7417.1.S1_at--616--8731Chr11:26773703..26773727 (25 bp)
TGTCAGCTACCTCCTGTGATTCAGG
LOC_Os11g45080
OsAffx.7417.1.S1_at--65--3491Chr11:26773682..26773706 (25 bp)
CAGGAGCTTGCAAAAGTTCAGTCAA
LOC_Os11g45080
OsAffx.7417.1.S1_at--909--6031Chr11:26773649..26773673 (25 bp)
GAGATTGCCATCCAAAGCTGTTAGT
LOC_Os11g45080
OsAffx.7417.1.S1_at--1093--3571Chr11:26773593..26773617 (25 bp)
CATATTACGGGCACTCTCATGATAA
LOC_Os11g45080
OsAffx.7417.1.S1_at--235--9931Chr11:26773108..26773584 (25 bp)
TACTGTACGTTTGTGATCTTCCTCT
LOC_Os11g45080
OsAffx.7417.1.S1_at--350--3351Chr11:26773082..26773106 (25 bp)
CACGTTGAACCCTACTAAGCTGCAG
LOC_Os11g45080
OsAffx.7417.1.S1_at--236--1612Chr11:26773065..26773089 (25 bp)
AGCTGCAGGCAACTGAGATGCTTCT
LOC_Os11g45080
OsAffx.7417.1.S1_at--742--1291Chr11:26773050..26773074 (25 bp)
AGATGCTTCTAGTACTTCTCAAGAA
LOC_Os11g45080
OsAffx.7417.1.S1_at--371--1351Chr11:26772977..26773001 (25 bp)
AGAGAATGGGATCACACCCGACCAT
LOC_Os11g45080
OsAffx.7417.1.S1_at--507--3071Chr11:26772943..26772967 (25 bp)
AATCAGTTCACTCTGCTTTGCATCT
LOC_Os11g45080
OsAffx.7417.1.S1_at--527--10271Chr11:26772927..26772951 (25 bp)
TTTGCATCTGCAGTGTGAAGGAGCC
LOC_Os11g45080
Target Sequence 
TGTCAGCTACCTCCTGTGATTCAGGAGCTTGCAAAAGTTCAGTCAAGCAATGCAGAGATTGCCATCCAAAGCTGTTAGTA
TTTTCTAGCTCAAGAATGAACAAGAATCAACATATTACGGGCACTCTCATGATAAAATCTAGATACTGTACGTTTGTGAT
CTTCCTCTCCACGTTGAACCCTACTAAGCTGCAGGCAACTGAGATGCTTCTAGTACTTCTCAAGAAGGAGATTAAAGGTG
ACAAAGAGCAAATCTTTGTTATCTCAAAGAGTCTAGAGAATGGGATCACACCCGACCATCCAGACCCCAATCAGTTCACT
CTGCTTTGCATCTGCAGTGTGAAGGAGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7417.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis