Browse Element(s) Details


OsAffx.19384.2.S1_at

Description tigr:9639.m04180
TID=OsAffx.19384.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4497011/11NB-ARC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g44950NANA11+26696865..26703729Beta-D-xylosidase, putative, expressed
LOC_Os11g44960Os.13019.1.S1_at1/1111+26715048..26718149NB-ARC domain containing protein, expressed
LOC_Os11g44970OsAffx.19384.2.S1_at11/1111+26727392..26730453NB-ARC domain containing protein
LOC_Os11g44970OsAffx.19384.1.S1_x_at6/1111+26727392..26730453NB-ARC domain containing protein
LOC_Os11g44980NANA11+26731217..26731837hypothetical protein
LOC_Os11g44990Os.4123.1.S1_s_at4/1111+26735263..26738354NB-ARC domain containing protein, expressed
LOC_Os11g45000NANA11+26738748..26741615retrotransposon protein, putative, unclassified
LOC_Os11g45010NANA11+26741799..26743553retrotransposon protein, putative, unclassified
LOC_Os11g45020Os.13019.1.S1_at1/1111+26743855..26745783hypothetical protein
LOC_Os11g45030OsAffx.24840.1.S1_at1/1111+26747006..26747227hypothetical protein
LOC_Os11g45040NANA11+26751716..26753593hypothetical protein
LOC_Os11g45050Os.26915.1.A1_at2/1111+26754286..26757387NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19384.2.S1_at--1028--10831Chr11:26729864..26729888 (25 bp)
TTGGACCCGAATTTGCTGGCCACAG
LOC_Os11g44970
OsAffx.19384.2.S1_at--440--2131Chr11:26729885..26729909 (25 bp)
ACAGGGCGAGTAATCTTGGACGAAC
LOC_Os11g44970
OsAffx.19384.2.S1_at--323--3611Chr11:26729899..26729923 (25 bp)
CTTGGACGAACAGTTGCTTTCCCCA
LOC_Os11g44970
OsAffx.19384.2.S1_at--112--9971Chr11:26730050..26730074 (25 bp)
TACCTCCAAGGATGCAGATACTGTC
LOC_Os11g44970
OsAffx.19384.2.S1_at--397--911Chr11:26730085..26730109 (25 bp)
AGGCTGGAACTTTCTGGCTGCCCAA
LOC_Os11g44970
OsAffx.19384.2.S1_at--387--2151Chr11:26730126..26730150 (25 bp)
ACAGCAGCTTGCACAGATTAACAGT
LOC_Os11g44970
OsAffx.19384.2.S1_at--553--6591Chr11:26730228..26730252 (25 bp)
GATTGCGACATGTCAAGCCCTGGAG
LOC_Os11g44970
OsAffx.19384.2.S1_at--914--8031Chr11:26730249..26730273 (25 bp)
GGAGAAAGTCTCTAACCTTCCTCAA
LOC_Os11g44970
OsAffx.19384.2.S1_at--948--4771Chr11:26730282..26730306 (25 bp)
GCTGCGCGTGCAAGATTGTCCAAAC
LOC_Os11g44970
OsAffx.19384.2.S1_at--1033--691Chr11:26730365..26730389 (25 bp)
ATGAGGTCTCTACATTGTGGGTGCC
LOC_Os11g44970
OsAffx.19384.2.S1_at--831--8631Chr11:26730390..26730414 (25 bp)
TGGGCTTCAACAGCAGTGCCGGCAA
LOC_Os11g44970
Target Sequence 
TTGGACCCGAATTTGCTGGCCACAGGGCGAGTAATCTTGGACGAACAGTTGCTTTCCCCAAGCTTGAAGAGTTGCTCATT
AGAGATATGCCCAACTGGGAAGAGTGGTTCTTTATTGATGAAGCAACGTCAACTGCTAAGGAAAGGGTTGATGATGGAGA
TTCTGCAATACCAAAAGAGAAAGCATTACCTCCAAGGATGCAGATACTGTCACGGTTGAGGAGGCTGGAACTTTCTGGCT
GCCCAAAGCTGAAAGCTCTTCCACAGCAGCTTGCACAGATTAACAGTCTGAAGGAGATAGAGCTAAGATGGGCAAGCAGC
CTGAAGGTGGTGGAGAACTTCCCCCTCCTCTCTGAGATGCTTTTGATTGCGACATGTCAAGCCCTGGAGAAAGTCTCTAA
CCTTCCTCAAGTGCGAGAGCTGCGCGTGCAAGATTGTCCAAACTTGAGACTTGTTGAGGATTTGAGCACTTTGGAGCAGT
TGTGGCTTTATGAGGATATGCATGAGGTCTCTACATTGTGGGTGCCTGGGCTTCAACAGCAGTGCCGGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19384.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis