Browse Element(s) Details


Os.13019.1.S1_at

Description gb:AY043283.1
DB_XREF= gi:15292618
GEN=YR9
TID=Os.13019.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.13019 (NCBI UniGene Cluster)
DEF=Oryza sativa subsp. japonica NBS-LRR-like protein (YR9) mRNA, complete cds.
PROD=NBS-LRR-like protein
FL= gb:AY043283.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g451803/11NB-ARC domain containing protein
LOC_Os11g449601/11NB-ARC domain containing protein, expressed
LOC_Os11g450201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g45130OsAffx.19382.1.S1_at11/1111+26812135..26817326NB-ARC domain containing protein, expressed
LOC_Os11g45130Os.17045.1.S1_s_at11/1111+26812135..26817326NB-ARC domain containing protein, expressed
LOC_Os11g45140OsAffx.31484.1.S1_at11/1111+26818923..26819838hypothetical protein
LOC_Os11g45140OsAffx.18095.1.S1_x_at1/1111+26818923..26819838hypothetical protein
LOC_Os11g45150OsAffx.19383.1.S1_x_at11/1111+26822765..26822965hypothetical protein
LOC_Os11g45160OsAffx.19384.1.S1_at11/1111+26828407..26830573NB-ARC domain containing protein
LOC_Os11g45160OsAffx.19384.1.S1_x_at11/1111+26828407..26830573NB-ARC domain containing protein
LOC_Os11g45160OsAffx.7416.1.S1_at1/1111+26828407..26830573NB-ARC domain containing protein
LOC_Os11g45170NANA11+26830928..26831605hypothetical protein
LOC_Os11g45180Os.13019.1.S1_at3/1111+26835221..26838316NB-ARC domain containing protein
LOC_Os11g45190Os.4123.1.S1_s_at2/1111+26843313..26846411NB-ARC domain containing protein
LOC_Os11g45200NANA11+26849209..26853980retrotransposon protein, putative, unclassified
LOC_Os11g45210OsAffx.31486.1.S1_at11/1111+26855242..26856382expressed protein
LOC_Os11g45220Os.52846.1.S1_at11/1111+26859994..26861496Plant invertase/pectin methylesterase inhibitor family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13019.1.S1_at--341--7891NONE
GGTTGACACTTGTGGGCTGCCCCAA
NONE
Os.13019.1.S1_at--925--2171Chr11:26744409..26744431 (23 bp)
ACACTTGTGGGCTGCCCCAAGCTGA
LOC_Os11g45020
Os.13019.1.S1_at--767--5972Chr11:26838033..26838057 (25 bp)
GAGACACAAGATACTTGAAGACGGT
LOC_Os11g45180
Os.13019.1.S1_at--295--3751NONE
CTCTCTGGTTGGCTTTTAGTTCAAA
NONE
Os.13019.1.S1_at--53--1612Chr11:26838144..26838168 (25 bp)
AGCTGCGTGCAGGTGGTTGCCCCAA
LOC_Os11g45180
Os.13019.1.S1_at--1056--3991Chr11:26838149..26838173 (25 bp)
CGTGCAGGTGGTTGCCCCAATTTGA
LOC_Os11g45180
Os.13019.1.S1_at--655--10511NONE
TTCAAGAGCAGCACCGCCAATTCCA
NONE
Os.13019.1.S1_at--83--5091NONE
GCACCGCCAATTCCATGGAGACGAG
NONE
Os.13019.1.S1_at--985--5891NONE
GAGCTCGAGATCAACGACTGGCCTC
NONE
Os.13019.1.S1_at--1054--5731NONE
GACTGGCCTCGCACATAGAATTAGA
NONE
Os.13019.1.S1_at--1062--10031NONE
TAGATGACATAAGGTTGCTAATCTC
NONE
Target Sequence 
GGTTGACACTTGTGGGCTGCCCCAAGCTGAGGGCTCTCCCACCACAGCTTGGACAGCAGGCCACCAACTTGAATGACCTC
CTTATAAGAGACACAAGATACTTGAAGACGGTGGAGGACCTCCCGTTCCTCTCTGGTTGGCTTTTAGTTCAAAGATGTGA
AGGCCTGGAGAGGATCTCCAACCTTCCCCAAGTGAGAGAGCTGCGTGCAGGTGGTTGCCCCAATTTGAGGCATGTTGAGG
AGTTGGGTGGTTTGGAGCAGCTATTGCTGGATGAAGGTATGCAGGAGATCTCTCAGCTGTGGGTCCCTGGGCTTCAAGAG
CAGCACCGCCAATTCCATGGAGACGAGCTCGAGATCAACGACTGGCCTCGCACATAGAATTAGATGACATAAGGTTGCTA
ATCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13019.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis