Browse Element(s) Details


Os.17070.1.S1_at

Description gb:AK064925.1
DB_XREF= gi:32974943
TID=Os.17070.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.17070 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013000N16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000N16, full insert sequence.
FL= gb:AK064925.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3605411/11Auxin response factor 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g36050Os.18612.1.S1_s_at11/114+21802137..21807705transmembrane CLPTM1 family protein, putative, expressed
LOC_Os04g36050Os.18612.1.S1_x_at11/114+21802137..21807705transmembrane CLPTM1 family protein, putative, expressed
LOC_Os04g36050Os.18612.2.S1_at10/114+21802137..21807705transmembrane CLPTM1 family protein, putative, expressed
LOC_Os04g36054Os.17070.1.S1_at11/114+21818847..21824637Auxin response factor 1, putative, expressed
LOC_Os04g36058Os.35511.1.S1_at11/114+21826730..21829677expressed protein
LOC_Os04g36062Os.8117.2.S1_at11/114+21830525..21836758DUF482, putative, expressed
LOC_Os04g36070Os.8117.1.S1_at11/114+21836451..21840299Response regulator receiver domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009733biological_processresponse to auxin stimulus
GO:0009911biological_processpositive regulation of flower development
GO:0010047biological_processfruit dehiscence
GO:0010150biological_processleaf senescence
GO:0010227biological_processfloral organ abscission
GO:0016481biological_processnegative regulation of transcription
GO:0045892biological_processnegative regulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17070.1.S1_at--102--7231Chr04:21824037..21824061 (25 bp)
GTCGACCTGGACAATCATGCCTCAG
LOC_Os04g36054
Os.17070.1.S1_at--198--5611Chr04:21824046..21824070 (25 bp)
GACAATCATGCCTCAGTTACTAACA
LOC_Os04g36054
Os.17070.1.S1_at--198--6751Chr04:21824061..21824085 (25 bp)
GTTACTAACAGGGACTGCTAACCAT
LOC_Os04g36054
Os.17070.1.S1_at--685--9071Chr04:21824076..21824100 (25 bp)
TGCTAACCATTGACTTTGCCCTAAT
LOC_Os04g36054
Os.17070.1.S1_at--954--5691Chr04:21824087..21824111 (25 bp)
GACTTTGCCCTAATTCTGATATGAT
LOC_Os04g36054
Os.17070.1.S1_at--935--7271Chr04:21824318..21824342 (25 bp)
GTGCCCAGATTTAGGTAAGAAGTCC
LOC_Os04g36054
Os.17070.1.S1_at--863--7051Chr04:21824332..21824356 (25 bp)
GTAAGAAGTCCTGAACACCAAGATT
LOC_Os04g36054
Os.17070.1.S1_at--306--1711Chr04:21824348..21824372 (25 bp)
ACCAAGATTGATGACGCTTCGGCCC
LOC_Os04g36054
Os.17070.1.S1_at--80--3751Chr04:21824372..21824396 (25 bp)
CTCTCCCCGTTGCTTAGGAGTAAAT
LOC_Os04g36054
Os.17070.1.S1_at--396--3591Chr04:21824423..21824447 (25 bp)
CATTAGGATTCCTGATTGCCTGCTA
LOC_Os04g36054
Os.17070.1.S1_at--421--6591Chr04:21824436..21824460 (25 bp)
GATTGCCTGCTATTGTGATTCCAAG
LOC_Os04g36054
Target Sequence 
GTCGACCTGGACAATCATGCCTCAGTTACTAACAGGGACTGCTAACCATTGACTTTGCCCTAATTCTGATATGATCATTT
GAGGAAATTCCAATGTTTCTTCATTACTGCTTCCTGTGCTGAAGACGCNACGCCCTTTTGTCTTGAATTGTGGTGGTATT
TGAACTGCAAGTGCCAGGAAGTTCCCAAGACTGGCAAGACCGCCTGGAAGAGGCATTCTGGCAAATGCATGCCGTTCCAA
ATTGTTTTGTGTTTTGGTAGGAGCCTTGGCGTTCTTGTCTGGTGCCCAGATTTAGGTAAGAAGTCCTGAACACCAAGATT
GATGACGCTTCGGCCCTCTCCCCGTTGCTTAGGAGTAAATAGGATTTGCATATGTATATATAGTATCATTAGGATTCCTG
ATTGCCTGCTATTGTGATTCCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17070.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis