Browse Element(s) Details


Os.171.1.S1_at

Description gb:AB026998.1
DB_XREF= gi:4827248
TID=Os.171.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.171 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) mRNA for acidic class III chitinase OsChib3a, complete cds.
PROD=acidic class III chitinase OsChib3a
FL= gb:D55713.1 gb:AK100973.1 gb:AB006188.3 gb:AB026998.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4707011/11Acidic endochitinase precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g47040Os.29878.1.S1_at11/111+27188929..27190282C2 domain containing protein, expressed
LOC_Os01g47050Os.41468.1.S1_at11/111+27199065..27201881F-box family protein, putative, expressed
LOC_Os01g47060NANA1+27204457..27206125expressed protein
LOC_Os01g47070Os.171.1.S1_at11/111+27212345..27213567Acidic endochitinase precursor, putative, expressed
LOC_Os01g47080Os.41467.1.S1_at11/111+27215260..27222566Pyruvate kinase isozyme G, chloroplast precursor, putative, expressed
LOC_Os01g47080Os.6058.1.S1_at11/111+27215260..27222566Pyruvate kinase isozyme G, chloroplast precursor, putative, expressed
LOC_Os01g47090NANA1+27227653..27228492transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.171.1.S1_at--63--9931Chr01:27213238..27213262 (25 bp)
TACGGCGGCATCATGGTGTGGAACC
LOC_Os01g47070
Os.171.1.S1_at--847--9451Chr01:27213266..27213290 (25 bp)
TCTACGACGTGCAGAACAACTTCAG
LOC_Os01g47070
Os.171.1.S1_at--59--1491Chr01:27213289..27213313 (25 bp)
AGCAACCAGGTGAAGAGCAGCGTCT
LOC_Os01g47070
Os.171.1.S1_at--789--1511Chr01:27213304..27213328 (25 bp)
AGCAGCGTCTGAGCTATAGCCTCAA
LOC_Os01g47070
Os.171.1.S1_at--622--5631Chr01:27213364..27213388 (25 bp)
GACACGTATACTTATTACTTGCACA
LOC_Os01g47070
Os.171.1.S1_at--1002--2051Chr01:27213380..27213404 (25 bp)
ACTTGCACAGTGGTTGAGTTGGACT
LOC_Os01g47070
Os.171.1.S1_at--420--8051Chr01:27213415..27213439 (25 bp)
GGAGATCCGTTCATACGCATCTGTA
LOC_Os01g47070
Os.171.1.S1_at--928--1511Chr01:27213457..27213481 (25 bp)
AGCAGTTATGTATGCACAACCCACA
LOC_Os01g47070
Os.171.1.S1_at--976--5111Chr01:27213470..27213494 (25 bp)
GCACAACCCACATGGTGTACTTTGT
LOC_Os01g47070
Os.171.1.S1_at--192--7451Chr01:27213484..27213508 (25 bp)
GTGTACTTTGTGTAACTCTGTGTTT
LOC_Os01g47070
Os.171.1.S1_at--318--3511Chr01:27213512..27213536 (25 bp)
CATGGGAGTGTATTTGCCGATATAA
LOC_Os01g47070
Target Sequence 
TACGGCGGCATCATGGTGTGGAACCGGTTCTACGACGTGCAGAACAACTTCAGCAACCAGGTGAAGAGCAGCGTCTGAGC
TATAGCCTCAACCTCAAGCCCCCAAGCCTGAGTAATTAACTTACGTGACACGTATACTTATTACTTGCACAGTGGTTGAG
TTGGACTATAAATAAGAGGAGATCCGTTCATACGCATCTGTAATATAGTAGTAGTAATAAGCAGTTATGTATGCACAACC
CACATGGTGTACTTTGTGTAACTCTGTGTTTGATCATGGGAGTGTATTTGCCGATATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.171.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis