Browse Element(s) Details


Os.17122.1.S1_at

Description gb:AK120626.1
DB_XREF= gi:37990249
TID=Os.17122.1
CNT=15
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.17122 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013102M20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013152N11, full insert sequence.
FL= gb:AK120626.1 gb:AK061450.1 gb:AK067365.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4938011/11Protease Do-like 1, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g49300Os.5739.1.S1_at10/115+28206568..28210000NifU-like N-terminal domain containing protein, mitochondrial precursor, putative, expressed
LOC_Os05g49310OsAffx.27380.1.S1_at11/115+28213403..28215056Transcription factor MYB21, putative
LOC_Os05g49320OsAffx.4662.1.S1_at11/115+28216068..2821680950S ribosomal protein L12-1, chloroplast precursor, putative, expressed
LOC_Os05g49320Os.7971.1.S1_x_at1/115+28216068..2821680950S ribosomal protein L12-1, chloroplast precursor, putative, expressed
LOC_Os05g49330NANA5+28217863..28218222hypothetical protein
LOC_Os05g49340NANA5+28221357..28221863hypothetical protein
LOC_Os05g49350Os.47971.1.A1_at11/115+28223817..28224783expressed protein
LOC_Os05g49360NANA5+28226592..28227075hypothetical protein
LOC_Os05g49370Os.50975.1.S1_at11/115+28227633..28228661expressed protein
LOC_Os05g49380Os.17122.1.S1_at11/115+28231795..28235367Protease Do-like 1, chloroplast precursor, putative, expressed
LOC_Os05g49390OsAffx.27381.1.S1_at11/115+28236893..28242625hypothetical protein
LOC_Os05g49400OsAffx.15164.1.S1_at11/115+28244147..28245511F-box domain containing protein
LOC_Os05g49410Os.49345.1.S1_at10/115+28246150..28247425expressed protein
LOC_Os05g49420Os.19553.1.S1_at11/115+28251474..28256334G-box binding factor 1, putative, expressed
LOC_Os05g49430Os.33445.1.A1_at11/115+28259281..28261831Possible apospory-associated protein C, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0030163biological_processprotein catabolism
GO:0009534cellular_componentthylakoid (sensu Viridiplantae)
GO:0009535cellular_componentthylakoid membrane (sensu Viridiplantae)
GO:0009543cellular_componentthylakoid lumen (sensu Viridiplantae)
GO:0004252molecular_functionserine-type endopeptidase activity
GO:0004295molecular_functiontrypsin activity
GO:0008236molecular_functionserine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17122.1.S1_at--919--4871Chr05:28233099..28233123 (25 bp)
GCTATATACTCACCTTCAGGAGCAT
LOC_Os05g49380
Os.17122.1.S1_at--276--4971Chr05:28233078..28233102 (25 bp)
GCATCATCCGGTGTTGGCTTTTCCA
LOC_Os05g49380
Os.17122.1.S1_at--126--8311Chr05:28233063..28233087 (25 bp)
GGCTTTTCCATTCCAGTTGATACAG
LOC_Os05g49380
Os.17122.1.S1_at--177--6111Chr05:28232847..28232871 (25 bp)
GAGTGCTTGTCTTGGATGCTCCTCC
LOC_Os05g49380
Os.17122.1.S1_at--709--5191Chr05:28232407..28232431 (25 bp)
GCAATCGACCAAGCGGGATTCCTAT
LOC_Os05g49380
Os.17122.1.S1_at--276--6591Chr05:28232391..28232415 (25 bp)
GATTCCTATGGTCGGCTTATCCTAG
LOC_Os05g49380
Os.17122.1.S1_at--895--4591Chr05:28232321..28232345 (25 bp)
GCGACTTGTATAGGATTCTGGATCA
LOC_Os05g49380
Os.17122.1.S1_at--1093--6471Chr05:28232159..28232183 (25 bp)
GATACCCGTGATTCTTGAACCAAAG
LOC_Os05g49380
Os.17122.1.S1_at--498--9231Chr05:28232107..28232131 (25 bp)
TCCATAGGATCCACTCTACTGTTTG
LOC_Os05g49380
Os.17122.1.S1_at--456--4371Chr05:28232097..28232121 (25 bp)
CCACTCTACTGTTTGTATGTCCACA
LOC_Os05g49380
Os.17122.1.S1_at--725--91Chr05:28232019..28232043 (25 bp)
ATTCGCTGTACATAATTCATGCTTG
LOC_Os05g49380
Target Sequence 
GCTATATACTCACCTTCAGGAGCATCATCCGGTGTTGGCTTTTCCATTCCAGTTGATACAGTTGGTGGTATTGTGGATCA
GCTTATAAAGTTTGGTAAAGTAACAAGACCTATTCTAGGGATAAAATTTGCTCCAGATCAATCTGTAGAGCAGCTTGGAT
TAAGTGGAGTGCTTGTCTTGGATGCTCCTCCAAATGGACCAGCAGGCAAAGCGGGTCTGCAATCGACCAAGCGGGATTCC
TATGGTCGGCTTATCCTAGGGGACATAATTACTTCTGTGAATGGAACAAAGGTAACAAATGGAAGCGACTTGTATAGGAT
TCTGGATCAGTGTAAAGTTGGAGAGAAGGTGACTGTGGAAGTATTGCGTGGAGATCAAAAGGAGAAGATACCCGTGATTC
TTGAACCAAAGCCAGATGAATCATAATAGTAAGCCNCCTCCATAGGATCCACTCTACTGTTTGTATGTCCACATAGATGC
AGAAATGGAATATATACAAGAAATTAGCATTTTCCCCTACCACNGGAATTCGCTGTACATAATTCATGCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17122.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis