Browse Element(s) Details


Os.17140.1.S1_x_at

Description gb:BI812596
DB_XREF= gi:16578501
DB_XREF=F003D12
CLONE=F003D12
TID=Os.17140.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.17140 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_187111.1 (A.thaliana) Mutator-like transposase (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4122011/11transposon protein, putative, Mutator sub-class, expressed
LOC_Os05g233401/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g41200Os.23780.1.A1_at11/114+24212531..24221252Lipase family protein, expressed
LOC_Os04g41210NANA4+24225354..24225750hypothetical protein
LOC_Os04g41220Os.17140.1.S1_at11/114+24236131..24239951transposon protein, putative, Mutator sub-class, expressed
LOC_Os04g41220Os.17140.1.S1_x_at11/114+24236131..24239951transposon protein, putative, Mutator sub-class, expressed
LOC_Os04g41220OsAffx.12229.1.S1_at2/114+24236131..24239951transposon protein, putative, Mutator sub-class, expressed
LOC_Os04g41220OsAffx.16833.2.S1_at1/114+24236131..24239951transposon protein, putative, Mutator sub-class, expressed
LOC_Os04g41229Os.7694.1.S1_at11/114+24242092..24249850Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g41229Os.51233.1.S1_at11/114+24242092..24249850Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g41250Os.10194.1.S1_at11/114+24252614..24260377U-box domain containing protein, expressed
LOC_Os04g41238Os.52795.1.S1_at11/114+24253348..24254720expressed protein
LOC_Os04g41260Os.55586.1.S1_at10/114+24261662..24265847Protoporphyrinogen oxidase, chloroplast/mitochondrial precursor, putative, expressed
LOC_Os04g41260Os.27575.2.S1_at10/114+24261662..24265847Protoporphyrinogen oxidase, chloroplast/mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17140.1.S1_x_at--701--7112Chr04:24239364..24239388 (25 bp)
GTCAGTGACAGGATCCAACCAACCT
LOC_Os04g41220
Os.17140.1.S1_x_at--953--4371Chr04:24239378..24239402 (25 bp)
CCAACCAACCTGAACCTTTGAGTGT
LOC_Os04g41220
Os.17140.1.S1_x_at--1156--331Chr04:24239490..24239514 (25 bp)
ATACAAAGGATAGCGCTGCTACTAC
LOC_Os04g41220
Os.17140.1.S1_x_at--115--4851Chr04:24239507..24239531 (25 bp)
GCTACTACGCCTTTGGCACAAGTCA
LOC_Os04g41220
Os.17140.1.S1_x_at--171--2531Chr04:24239543..24239567 (25 bp)
AACTTCATTCCTGTGTCTCCTGATA
LOC_Os04g41220
Os.17140.1.S1_x_at--485--7171Chr04:24239557..24239581 (25 bp)
GTCTCCTGATAGTCCAGCCATGAGT
LOC_Os04g41220
Os.17140.1.S1_x_at--82--10431Chr04:24239614..24239638 (25 bp)
TTAGGGATCCTTTTTAATTAACATG
LOC_Os04g41220
Os.17140.1.S1_x_at--840--7951Chr04:24239618..24239642 (25 bp)
GGATCCTTTTTAATTAACATGTGCT
LOC_Os04g41220
Os.17140.1.S1_x_at--678--3671Chr04:24239623..24239647 (25 bp)
CTTTTTAATTAACATGTGCTCACAT
LOC_Os04g41220
Os.17140.1.S1_x_at--109--5671Chr04:24239795..24239819 (25 bp)
GACATGCATATGTGATGGTACTGTA
LOC_Os04g41220
Os.17140.1.S1_x_at--1121--811Chr04:24239809..24239833 (25 bp)
ATGGTACTGTATGTGGCACTTAATG
LOC_Os04g41220
Target Sequence 
GTCAGTGACAGGATCCAACCAACCTGAACCTTTGAGTGTGTTGATGCCACTANCAGCGCCTGGAGAGAACTCTNNAAGGC
CAAGGCNTAAGACANNGACCAANNCTAAAGCCAAGATAGCTCCTAGGAAGAATACAAAGGATAGCGCTGCTACTACGCCT
TTGGCACAAGTCAANCAAAANGGCAACTTCATTCCTGTGTCTCCTGATAGTCCAGCCATGAGTACAAGGAGCAAAANGAA
ATCTCTAAATTTTAATTAGGGATCCTTTTTAATTAACATGTGCTCACATATTTTGGTACTGTGATCTCTGGTTGCACGGT
ACTTATGTAGTACTCCAGTTAATCTAGCGTTTTGGTACTATGGTNCTGATGNATTTTAGTCATGTATATGGTGATGGTAC
TNTATGTGGTGAGATGGCACTTCTATGGCACTGCNAGACATGCATATGTGATGGTACTGTATGTGGCACTTAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17140.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis