Browse Element(s) Details


Os.17168.1.A1_at

Description gb:AK066311.1
DB_XREF= gi:32976329
TID=Os.17168.1
CNT=17
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.17168 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013068A09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013068A09, full insert sequence.
FL= gb:AK066311.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4559011/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g45530OsAffx.19392.1.S1_at10/1111+27056481..27060656transposon protein, putative, unclassified
LOC_Os11g45540OsAffx.719.4.S1_at10/1111+27064276..27067306Protein kinase domain containing protein, expressed
LOC_Os11g45540OsAffx.719.1.S1_s_at8/1111+27064276..27067306Protein kinase domain containing protein, expressed
LOC_Os11g45550Os.39421.1.S1_at9/1111+27068232..27069221expressed protein
LOC_Os11g45550OsAffx.20967.1.S1_x_at1/1111+27068232..27069221expressed protein
LOC_Os11g45560OsAffx.31494.1.S1_at11/1111+27069869..27072475BTB/POZ domain containing protein
LOC_Os11g45570OsAffx.31495.1.S1_at11/1111+27075411..27075842hypothetical protein
LOC_Os11g45580OsAffx.31496.1.S1_at11/1111+27077205..27082227hypothetical protein
LOC_Os11g45590Os.17168.1.A1_at11/1111+27084173..27089421transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os11g45600OsAffx.31497.1.S1_at11/1111+27090023..27091090rust resistance protein Rp1-dp8, putative
LOC_Os11g45610NANA11+27091497..27096307retrotransposon protein, putative, unclassified, expressed
LOC_Os11g45620OsAffx.31498.1.S1_at11/1111+27096534..27098953Lr21, putative
LOC_Os11g45630NANA11+27100216..27100775hypothetical protein
LOC_Os11g45640OsAffx.19394.1.S1_at11/1111+27102090..27102851hypothetical protein
LOC_Os11g45650NANA11+27105230..27108548transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g45660Os.46053.2.S1_x_at10/1111+27109751..27112983transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17168.1.A1_at--441--1631Chr11:27088430..27088454 (25 bp)
AGCGGCTCAGCCTAGACCAGAACAG
LOC_Os11g45590
Os.17168.1.A1_at--428--10871Chr11:27088624..27088648 (25 bp)
TTGGAGCACTCCCTACAAAGGTTGT
LOC_Os11g45590
Os.17168.1.A1_at--520--5811Chr11:27088655..27088679 (25 bp)
GACCCAGGTGGTTTCGGCTGATGAA
LOC_Os11g45590
Os.17168.1.A1_at--160--9471Chr11:27088964..27088988 (25 bp)
TCTGATTAAGGTTGTCATCCCTCGC
LOC_Os11g45590
Os.17168.1.A1_at--516--6371Chr11:27088992..27089016 (25 bp)
GATCCTAGTGGATTACCAGTTGCTG
LOC_Os11g45590
Os.17168.1.A1_at--202--651Chr11:27089117..27089141 (25 bp)
ATGCAGATGTGGACGGCGCCACCAA
LOC_Os11g45590
Os.17168.1.A1_at--1145--3431Chr11:27089183..27089207 (25 bp)
CAGTTGTTGCAGTGTTCTACCCTGA
LOC_Os11g45590
Os.17168.1.A1_at--266--5811Chr11:27089233..27089257 (25 bp)
GACGCGTAGATTATCCCGCTATGTA
LOC_Os11g45590
Os.17168.1.A1_at--400--10311Chr11:27089276..27089300 (25 bp)
TTTCTTTTGCGCCAGTTTGCTAAAT
LOC_Os11g45590
Os.17168.1.A1_at--379--9771Chr11:27089320..27089344 (25 bp)
TAAGTTGAACCTTCCAATAGCTTGG
LOC_Os11g45590
Os.17168.1.A1_at--918--7931Chr11:27089343..27089367 (25 bp)
GGATTTATGCAGAGCGACCGATTAA
LOC_Os11g45590
Target Sequence 
AGCGGCTCAGCCTAGACCAGAACAGGAAAGTATCCTGTTGCAGGCACAGCAACAAGTGCAATTACAGAAACTTGTATATC
AAGTTGGAGCACTCCCTACAAAGGTTGTNTGCCTGACCCAGGTGGTTTCGGCTGATGAATTAAAAGATGACGAGGAGTAT
GAAGACATTATGGAGGACATGAGATTGGAANCAGGCAAATATGGTAATCTGATTAAGGTTGTCATCCCTCGCCCTGATCC
TAGTGGATTACCAGTTGCTGGAGTTGGAAAGGTTTTCTTGGAGTATGCAGATGTGGACGGCGCCACCAAAGCAAAGACGG
CAATGCATGGAAGGAAGTTCGGTGGAAATCCAGTTGTTGCAGTGTTCTACCCTGAGAACAAGTTTNCTAGTGCGGAATAT
GACGCGTAGATTATCCCGCTATGTAAAACACTAGTCTTTTGTTTTTCTTTTGCGCCAGTTTGCTAAATTGTAACAACAAT
TTCTCTTTAAGTTGAACCTTCCAATAGCTTGGATTTATGCAGAGCGACCGATTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17168.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis