Browse Element(s) Details


OsAffx.19392.1.S1_at

Description tigr:9639.m04235
TID=OsAffx.19392.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=FAR1 family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4553010/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g45490NANA11+27029019..27031973transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g45500NANA11+27035278..27035715retrotransposon protein, putative, unclassified
LOC_Os11g45510OsAffx.2218.2.S1_s_at11/1111+27046748..27048718expressed protein
LOC_Os11g45520OsAffx.31493.1.S1_at10/1111+27054854..27056116hypothetical protein
LOC_Os11g45530OsAffx.19392.1.S1_at10/1111+27056481..27060656transposon protein, putative, unclassified
LOC_Os11g45540OsAffx.719.4.S1_at10/1111+27064276..27067306Protein kinase domain containing protein, expressed
LOC_Os11g45540OsAffx.719.1.S1_s_at8/1111+27064276..27067306Protein kinase domain containing protein, expressed
LOC_Os11g45550Os.39421.1.S1_at9/1111+27068232..27069221expressed protein
LOC_Os11g45550OsAffx.20967.1.S1_x_at1/1111+27068232..27069221expressed protein
LOC_Os11g45560OsAffx.31494.1.S1_at11/1111+27069869..27072475BTB/POZ domain containing protein
LOC_Os11g45570OsAffx.31495.1.S1_at11/1111+27075411..27075842hypothetical protein
LOC_Os11g45580OsAffx.31496.1.S1_at11/1111+27077205..27082227hypothetical protein
LOC_Os11g45590Os.17168.1.A1_at11/1111+27084173..27089421transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19392.1.S1_at--625--7771Chr11:27058571..27058595 (25 bp)
GGTGCTAAGCCCAATATCAGTTCGT
LOC_Os11g45530
OsAffx.19392.1.S1_at--215--9631Chr11:27058555..27058579 (25 bp)
TCAGTTCGTAGAAGAGGTCGTCCTC
LOC_Os11g45530
OsAffx.19392.1.S1_at--914--1051Chr11:27058109..27058133 (25 bp)
AGGGACTCCAATCAAATCACCCGGC
LOC_Os11g45530
OsAffx.19392.1.S1_at--791--1711Chr11:27058084..27058108 (25 bp)
ACCACCATCTCACATTAGTTCTTAC
LOC_Os11g45530
OsAffx.19392.1.S1_at--847--10551Chr11:27058068..27058090 (23 bp)
TTCTTACATGGATCTTCTTCAGGGA
LOC_Os11g45530
OsAffx.19392.1.S1_at--1043--10511NONE
TTCAGGGAAATGTCGTACAAGCGTC
NONE
OsAffx.19392.1.S1_at--909--2211Chr11:27057416..27057440 (25 bp)
ACAAGCGTCGGACACATGCGTCGGA
LOC_Os11g45530
OsAffx.19392.1.S1_at--727--2971Chr11:27057365..27057389 (25 bp)
AATGGGTCTCACAACTTCCAAGTCT
LOC_Os11g45530
OsAffx.19392.1.S1_at--1000--9451Chr11:27057307..27057331 (25 bp)
TCGGCCATCGACAGCAAGAGAGCAA
LOC_Os11g45530
OsAffx.19392.1.S1_at--529--2951Chr11:27057284..27057308 (25 bp)
AATGGAAACCGGGTCAGTCACCATC
LOC_Os11g45530
OsAffx.19392.1.S1_at--818--1031Chr11:27057258..27057282 (25 bp)
AGGTCGCCGGCTACAGTAGAACCAA
LOC_Os11g45530
Target Sequence 
GGTGCTAAGCCCAATATCAGTTCGTAGAAGAGGTCGTCCTCCTTCACTGAGAAAACAATCAAAATTGGATCAAGTGGTAA
GGAGATTGAGAATGAAGAAGCAACAAGAATCTACAATTGAAGTACAAAGTCGAAGAAGGAGAAAGACAAGGACCAAAAAT
GTTATATCAAAAGATAAACAGCTTATCAATATTCAGAACTCTAGACAAATGGAGGTAAATTTTGATCATTGCTATGGTGG
AGCATATGAGGCAGGCAGTGCAGAGTTTGCTGCAAATGAGTTTCAGGGACTCCAATCAAATCACCCGGCACCACCATCTC
ACATTAGTTCTTACATGGATCTTCTTCAGGGAAATGTCGTACAAGCGTCGGACACATGCGTCGGACGTATAGCAAAGTTG
ATTGAAAATCTAATGGGTCTCACAACTTCCAAGTCTGCCACCGGCGACGGCGGCAAAACCACGTCGTCGTCGGCCATCGA
CAGCAAGAGAGCAATGGAAACCGGGTCAGTCACCATCCAGGTCGCCGGCTACAGTAGAACCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19392.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis