Browse Element(s) Details


OsAffx.31493.1.S1_at

Description tigr:9639.m04234
TID=OsAffx.31493.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4552010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g45490NANA11+27029019..27031973transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g45500NANA11+27035278..27035715retrotransposon protein, putative, unclassified
LOC_Os11g45510OsAffx.2218.2.S1_s_at11/1111+27046748..27048718expressed protein
LOC_Os11g45520OsAffx.31493.1.S1_at10/1111+27054854..27056116hypothetical protein
LOC_Os11g45530OsAffx.19392.1.S1_at10/1111+27056481..27060656transposon protein, putative, unclassified
LOC_Os11g45540OsAffx.719.4.S1_at10/1111+27064276..27067306Protein kinase domain containing protein, expressed
LOC_Os11g45540OsAffx.719.1.S1_s_at8/1111+27064276..27067306Protein kinase domain containing protein, expressed
LOC_Os11g45550Os.39421.1.S1_at9/1111+27068232..27069221expressed protein
LOC_Os11g45550OsAffx.20967.1.S1_x_at1/1111+27068232..27069221expressed protein
LOC_Os11g45560OsAffx.31494.1.S1_at11/1111+27069869..27072475BTB/POZ domain containing protein
LOC_Os11g45570OsAffx.31495.1.S1_at11/1111+27075411..27075842hypothetical protein
LOC_Os11g45580OsAffx.31496.1.S1_at11/1111+27077205..27082227hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31493.1.S1_at--339--6351Chr11:27054908..27055285 (25 bp)
GATCCAATGAAAGGTCCTATCGACC
LOC_Os11g45520
OsAffx.31493.1.S1_at--578--1031Chr11:27055272..27055296 (25 bp)
AGGTCCTATCGACCAATGTCTGTCG
LOC_Os11g45520
OsAffx.31493.1.S1_at--394--2991Chr11:27055286..27055310 (25 bp)
AATGTCTGTCGATAGGTCCTGCACA
LOC_Os11g45520
OsAffx.31493.1.S1_at--1137--271Chr11:27055297..27055321 (25 bp)
ATAGGTCCTGCACACCCACATGCAA
LOC_Os11g45520
OsAffx.31493.1.S1_at--692--1811Chr11:27055310..27055334 (25 bp)
ACCCACATGCAACAACAGGCCATTT
LOC_Os11g45520
OsAffx.31493.1.S1_at--874--2171Chr11:27055321..27055341 (21 bp)
ACAACAGGCCATTTACTGGTCGGCA
LOC_Os11g45520
OsAffx.31493.1.S1_at--399--8431NONE
GGCCATTTACTGGTCGGCACCTTGG
NONE
OsAffx.31493.1.S1_at--377--3931Chr11:27056026..27056050 (25 bp)
CGGCACCTTGGCCTTCAGTAGTTCA
LOC_Os11g45520
OsAffx.31493.1.S1_at--339--9651Chr11:27056040..27056064 (25 bp)
TCAGTAGTTCAGTGTCCGAGGGAGA
LOC_Os11g45520
OsAffx.31493.1.S1_at--900--6731Chr11:27056046..27056070 (25 bp)
GTTCAGTGTCCGAGGGAGATTCCAA
LOC_Os11g45520
OsAffx.31493.1.S1_at--971--6691Chr11:27056051..27056075 (25 bp)
GTGTCCGAGGGAGATTCCAAAACCA
LOC_Os11g45520
Target Sequence 
GATCCAATGAAAGGTCCTATCGACCAATGTCTGTCGATAGGTCCTGCACACCCACATGCAACAACAGGCCATTTACTGGT
CGGCACCTTGGCCTTCAGTAGTTCAGTGTCCGAGGGAGATTCCAAAACCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31493.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis