Browse Element(s) Details


Os.17286.1.S1_at

Description gb:CB647995
DB_XREF= gi:29642988
DB_XREF=OSJNEb11C21.r
CLONE=OSJNEb11C21
TID=Os.17286.1
CNT=11
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.17286 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Putative NAM (no apical meristem) protein (OSJNBb0014I10.5), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2106011/11NAC domain transcription factor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g21040Os.12186.2.S1_x_at11/113+11936096..11938398expressed protein
LOC_Os03g21040Os.12186.2.S1_at11/113+11936096..11938398expressed protein
LOC_Os03g21040Os.12186.1.S1_at10/113+11936096..11938398expressed protein
LOC_Os03g21050Os.50244.1.S1_x_at10/113+11941346..11947616retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g21050OsAffx.21754.1.S1_x_at2/113+11941346..11947616retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g21060Os.17286.1.S1_at11/113+11952807..11955207NAC domain transcription factor, putative, expressed
LOC_Os03g21070OsAffx.12963.1.S1_at11/113+11966381..11967148hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0009825biological_processmultidimensional cell growth
GO:0009908biological_processflower development
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17286.1.S1_at--269--6751Chr03:11953333..11953357 (25 bp)
GTTCATGCGTTGGTGCAACTTTCCA
LOC_Os03g21060
Os.17286.1.S1_at--1148--10691Chr03:11953295..11953319 (25 bp)
TTGCAGGGATCGTCACTGGGACTGA
LOC_Os03g21060
Os.17286.1.S1_at--886--8631Chr03:11953279..11953303 (25 bp)
TGGGACTGAGCCACCAGATGCTGCT
LOC_Os03g21060
Os.17286.1.S1_at--585--1291Chr03:11953264..11953288 (25 bp)
AGATGCTGCTCCACTCTAACATGGG
LOC_Os03g21060
Os.17286.1.S1_at--47--2571Chr03:11953235..11953259 (25 bp)
AACTGATAGCTCGTTCTTCGTACAT
LOC_Os03g21060
Os.17286.1.S1_at--457--10631Chr03:11953219..11953243 (25 bp)
TTCGTACATAATACCACAGCCTGAT
LOC_Os03g21060
Os.17286.1.S1_at--360--2491Chr03:11953153..11953177 (25 bp)
AACAGTGAGGTCTATTTCGAAAGCA
LOC_Os03g21060
Os.17286.1.S1_at--162--3111Chr03:11953071..11953095 (25 bp)
AATTTGTACTTGTGTGGACTAGCTA
LOC_Os03g21060
Os.17286.1.S1_at--354--2031Chr03:11953054..11953078 (25 bp)
ACTAGCTAGGTCGTCCGATCATGCA
LOC_Os03g21060
Os.17286.1.S1_at--760--2011Chr03:11952982..11953006 (25 bp)
ACTACTGTGTACTCAAGCTAGCTCA
LOC_Os03g21060
Os.17286.1.S1_at--1078--9751Chr03:11952923..11952947 (25 bp)
TAAGACTTTGAGATAGACCCACTAG
LOC_Os03g21060
Target Sequence 
GTTCATGCGTTGGTGCAACTTTCCAAATAGGCAGCNCCTTGCAGGGATCGTCACTGGGACTGAGCCACCAGATGCTGCTC
CACTCTAACATGGGGATGAACTGATAGCTCGTTCTTCGTACATAATACCACAGCCTGATTAAACNCTGAACATAATTGCA
CATGGCGAATTGATGATTTGAACAGTGAGGTCTATTTCGAAAGCAAATAGGTCCAAAACGATAGATTTAAATAGTAAATA
TATTGGGAAAGAAATTGTACTTAATTTGTACTTGTGTGGACTAGCTAGGTCGTCCGATCATGCANTAGCTATATAGTTTG
TGGTGTGTATACANTTTTTTCTCNNNNNGTACTATACTACTGTGTACTCAAGCTAGCTCAGTACTAAAGATTAATTAAGC
TAGATAGGGGTTGATAAGACTTTGAGATAGACCCACTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17286.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis