Browse Element(s) Details


Os.17292.1.S1_x_at

Description gb:AY224571.1
DB_XREF= gi:29370072
TID=Os.17292.1
CNT=5
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.17292 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 29957 unknown mRNA
DEF=Oryza sativa (japonica cultivar-group) isolate 29957 unknown mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4275010/11roothairless 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g42690OsAffx.92.1.S1_at9/113+23728384..23732478transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g42690Os.47407.1.A1_at1/113+23728384..23732478transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g42700OsAffx.25497.1.S1_at11/113+23734469..23734778hypothetical protein
LOC_Os03g42710OsAffx.25498.1.S1_at11/113+23735539..23737020transducin family protein, putative
LOC_Os03g42720OsAffx.3493.1.S1_at11/113+23739610..23742050hypothetical protein
LOC_Os03g42730Os.46523.3.S1_x_at5/113+23743671..23745689hypothetical protein
LOC_Os03g42730Os.46523.1.S1_at4/113+23743671..23745689hypothetical protein
LOC_Os03g42740OsAffx.25499.1.S1_at11/113+23748704..23749653F-box family protein, putative
LOC_Os03g42750Os.17292.2.A1_s_at11/113+23751455..23762616roothairless 1, putative, expressed
LOC_Os03g42750Os.17292.1.S1_x_at10/113+23751455..23762616roothairless 1, putative, expressed
LOC_Os03g42760Os.52288.1.S1_at11/113+23766859..23770876IBR domain containing protein, expressed
LOC_Os03g42760Os.26818.2.S1_at1/113+23766859..23770876IBR domain containing protein, expressed
LOC_Os03g42770Os.53974.1.S1_at11/113+23771935..23778523U3 snoRNP-associated, putative, expressed
LOC_Os03g42780OsAffx.25501.1.S1_x_at11/113+23781927..23787061IBR domain containing protein, expressed
LOC_Os03g42780OsAffx.25501.1.S1_at11/113+23781927..23787061IBR domain containing protein, expressed
LOC_Os03g42780Os.7529.1.S1_at1/113+23781927..23787061IBR domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17292.1.S1_x_at--941--8851Chr03:23759973..23760250 (25 bp)
TGATGACAGAAACCGCCTACTTTTT
LOC_Os03g42750
Os.17292.1.S1_x_at--374--2051Chr03:23759955..23759979 (25 bp)
ACTTTTTTCTATCCTGACCATGTGC
LOC_Os03g42750
Os.17292.1.S1_x_at--872--3651Chr03:23759921..23759945 (25 bp)
CTTAGCTATCTTCCAAAAGTCGTTG
LOC_Os03g42750
Os.17292.1.S1_x_at--413--3171Chr03:23759895..23759919 (25 bp)
AATTGATTTTGTGGAGCTAGCCCTC
LOC_Os03g42750
Os.17292.1.S1_x_at--363--1571Chr03:23759885..23759905 (21 bp)
AGCTAGCCCTCTGGGCCAAGGAAAA
LOC_Os03g42750
Os.17292.1.S1_x_at--156--8151Chr03:23759595..23759619 (25 bp)
GGACAACCAATCGAGCACCCAAGAT
LOC_Os03g42750
Os.17292.1.S1_x_at--659--2991Chr03:23759513..23759537 (25 bp)
AATGATCTTGTGTCCCAAGCAAAGG
LOC_Os03g42750
Os.17292.1.S1_x_at--84--5671NONE
GACATGGAGGCACTTCTTGACACAT
NONE
Os.17292.1.S1_x_at--720--5391Chr03:23758083..23758107 (25 bp)
GAAGCAGATGCTTTCTCTGAGAGAT
LOC_Os03g42750
Os.17292.1.S1_x_at--267--7191Chr03:23757805..23757829 (25 bp)
GTCTGGATGCTGCTAGTGCAACCGT
LOC_Os03g42750
Os.17292.1.S1_x_at--917--10731Chr03:23757312..23757336 (25 bp)
TTGAATCACGCAACAATGGCTTGGA
LOC_Os03g42750
Target Sequence 
TGATGACAGAAACCGCCTACTTTTTTCTATCCTGACCATGTGCAAAGAGATACTTAGCTATCTTCCAAAAGTCGTTGGAA
TTGATTTTGTGGAGCTAGCCCTCTGGGCCAAGGAAAATACAGTGACTCTGGACAACCAATCGAGCACCCAAGATGGACAA
GAAAAATCTGTCACAACTCAAACTGAGAGGAAAGTAACTGTAACTGTTGAAAATGATCTTGTGTCCCAAGCAAAGGATGA
AGAGGAAGACATGGAGGCACTTCTTGACACATATGTCATGGGCATAGGTGAAGCAGATGCTTTCTCTGAGAGATTGAAAC
AGGAACTTGTTGCTTTGGAAGCAGCCAATGTCTATCNACTACTGCAGAGTGAACCTTTAATAGATGAGGTTTTGCAGGGT
CTGGATGCTGCTAGTGCAACCGTAGATGATATGGATGAGTGGTTACGCATTTTTAATATGAAGCTCAGGCATATGAGAGA
AGATATTGCATCGATTGAATCACGCAACAATGGCTTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17292.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis