Browse Element(s) Details


Os.17299.1.S1_at

Description gb:CB655994
DB_XREF= gi:29659719
DB_XREF=OSJNEc09N20.r
CLONE=OSJNEc09N20
TID=Os.17299.1
CNT=45
FEA=FLmRNA
TIER=Stack
STK=6
UG=Os.17299 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-047-B04, full insert sequence
FL= gb:AK103226.1 gb:AK105088.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4688010/11Glycerol 3-phosphate permease, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g46850OsAffx.26493.1.S1_at11/114+27540099..27540606hypothetical protein
LOC_Os04g46860Os.20826.1.S1_at11/114+27545574..27548230GRAS family transcription factor containing protein, expressed
LOC_Os04g46870OsAffx.26494.1.S1_at11/114+27552933..27554218hypothetical protein
LOC_Os04g46880Os.17299.1.S1_at10/114+27564420..27568042Glycerol 3-phosphate permease, putative, expressed
LOC_Os04g46880Os.6231.1.S1_at1/114+27564420..27568042Glycerol 3-phosphate permease, putative, expressed
LOC_Os04g46890Os.5991.1.S1_at11/114+27572799..27576762snoRNA binding domain containing protein, putative, expressed
LOC_Os04g46900OsAffx.14303.1.S1_at11/114+27576761..27596813Beige/BEACH domain containing protein, expressed
LOC_Os04g46900Os.53858.1.S1_x_at11/114+27576761..27596813Beige/BEACH domain containing protein, expressed
LOC_Os04g46900Os.14811.1.S1_at11/114+27576761..27596813Beige/BEACH domain containing protein, expressed
LOC_Os04g46900OsAffx.14303.1.S1_x_at10/114+27576761..27596813Beige/BEACH domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0008643biological_processcarbohydrate transport
GO:0015794biological_processglycerol-3-phosphate transport
GO:0005215molecular_functiontransporter activity
GO:0005351molecular_functionsugar porter activity
GO:0015169molecular_functionglycerol-3-phosphate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17299.1.S1_at--470--9711Chr04:27565383..27565407 (25 bp)
TCAACTCTGTTCGACGTGGGTGGCG
LOC_Os04g46880
Os.17299.1.S1_at--486--10551Chr04:27565263..27565287 (25 bp)
TTCTTCTACCGCATATACGGCAGCT
LOC_Os04g46880
Os.17299.1.S1_at--513--1551Chr04:27565242..27565266 (25 bp)
AGCTTCTCGCTGTACTCGAACATCG
LOC_Os04g46880
Os.17299.1.S1_at--918--7971Chr04:27565199..27565223 (25 bp)
GGATGCTCGTCAACGGGCCGTACGC
LOC_Os04g46880
Os.17299.1.S1_at--4--8991Chr04:27565127..27565151 (25 bp)
TGAACGGCAACTCCAGGGCGCTCGC
LOC_Os04g46880
Os.17299.1.S1_at--1040--4371Chr04:27565025..27565049 (25 bp)
CCAAGAGCTGGAGCGGCGTGTTCAC
LOC_Os04g46880
Os.17299.1.S1_at--249--4671Chr04:27565010..27565034 (25 bp)
GCGTGTTCACGATGCTCATGGCGTC
LOC_Os04g46880
Os.17299.1.S1_at--749--10071Chr04:27564898..27564922 (25 bp)
TAGTGATCTGCCAGTGTCCTCCATG
LOC_Os04g46880
Os.17299.1.S1_at--516--7451Chr04:27564885..27564909 (25 bp)
GTGTCCTCCATGGAACAATCTTAGG
LOC_Os04g46880
Os.17299.1.S1_at--286--431Chr04:27564868..27564892 (25 bp)
ATCTTAGGCTCCATTAGACACTTTG
LOC_Os04g46880
Os.17299.1.S1_at--627--8671NONE
TGTGTCCCTGGTGAAATGCTGAGAA
NONE
Target Sequence 
TCAACTCTGTTCGACGTGGGTGGCGTTGTCGGCGGCATCCTTGCCGGCCACATCTCCGACCGCCTCGACGCACGGGCGNT
GACGGCGGCGAGCTTCACGTTCTCGGCGATCCCGGCGCTCTTCTTCTACCGCATATACGGCAGCTTCTCGCTGTACTCGA
ACATCGCCCTCATGTTCGTCACCGGGATGCTCGTCAACGGGCCGTACGCCCTCATCACCACCGCCGTCTCCGCCGACCTC
GGCACGCACAGCTCCCTGAACGGCAACTCCAGGGCGCTCGCCACCGTCACGGCGATCATCGACGGGACGGGGTCGATCGG
CGCCGCGGTCGGCCCGCTGCTGACGGGGTACATNTCTGCCAAGAGCTGGAGCGGCGTGTTCACGATGCTCATGGCGTCCG
CNNTCGTCGCGGGGCTGCTCCTGTCGAGGCTGGTCATGGCGGAGATCTCCGCGAAGATGGAGTCCCGGAGGCCTGACGCT
GCTGCTAGTGATCTGCCAGTGTCCTCCATGGAACAATCTTAGGCTCCATTAGACACTTTGGAAANTGTGTCCCTGGTGAA
ATGCTGAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17299.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis