Browse Element(s) Details


Os.17306.1.S1_at

Description gb:AK121968.1
DB_XREF= gi:37991591
TID=Os.17306.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17306 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033108F20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033108F20, full insert sequence.
FL= gb:AK121968.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1473011/11Ubiquitin carboxyl-terminal hydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g14710OsAffx.12040.1.S1_at9/112+8111705..8113435expressed protein
LOC_Os02g14720Os.17979.1.S1_at11/112+8115219..8121650expressed protein
LOC_Os02g14730Os.17306.1.S1_at11/112+8136541..8143468Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os02g14740NANA2+8151391..8151966hypothetical protein
LOC_Os02g14750NANA2+8157598..8158715hypothetical protein
LOC_Os02g14760Os.5802.1.S1_at11/112+8164660..8169144RNA-binding protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0004197molecular_functioncysteine-type endopeptidase activity
GO:0004221molecular_functionubiquitin thiolesterase activity
GO:0004843molecular_functionubiquitin-specific protease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17306.1.S1_at--761--8411Chr02:8142773..8142797 (25 bp)
GGCCTTATTATGCTCAAGACCATCC
LOC_Os02g14730
Os.17306.1.S1_at--463--1431Chr02:8142863..8142887 (25 bp)
AGAACACAGGCTTTGTCTCAGATTC
LOC_Os02g14730
Os.17306.1.S1_at--469--3371Chr02:8142901..8142925 (25 bp)
CACCTGCCCGGCAATGTACATAGAG
LOC_Os02g14730
Os.17306.1.S1_at--53--5351Chr02:8142926..8142950 (25 bp)
GAAGATATCCAGACAGGGCCTGTTC
LOC_Os02g14730
Os.17306.1.S1_at--304--1091Chr02:8142940..8142964 (25 bp)
AGGGCCTGTTCTTCTTCAGCTGAAC
LOC_Os02g14730
Os.17306.1.S1_at--984--7491Chr02:8143096..8143120 (25 bp)
GTGGTTACCACTGCCATTAAATACC
LOC_Os02g14730
Os.17306.1.S1_at--886--1791Chr02:8143118..8143142 (25 bp)
ACCGCCTCATGTTCTTTTATTTCAG
LOC_Os02g14730
Os.17306.1.S1_at--859--1111Chr02:8143189..8143213 (25 bp)
AGTGACTCAATGTAGCAGGCCAGCA
LOC_Os02g14730
Os.17306.1.S1_at--290--3711Chr02:8143230..8143254 (25 bp)
CTAGGTGCCTAGCATTTCAGGAGAT
LOC_Os02g14730
Os.17306.1.S1_at--570--2131Chr02:8143267..8143291 (25 bp)
ACAGTGACAGGCTTTGTGCCATCCA
LOC_Os02g14730
Os.17306.1.S1_at--293--10831Chr02:8143280..8143304 (25 bp)
TTGTGCCATCCATTGTTCAACCAAA
LOC_Os02g14730
Target Sequence 
GGCCTTATTATGCTCAAGACCATCCTCCTGGCNAGTTTTNCCNTCGTGTACAAGGTTGTCACCTTCCAATCCACNAACNA
AGGTACTTCCAAGAGAACACAGGCTTTGTCTCAGATTCTTCCATGCCGGCTCACCTGCCCGGCAATGTACATAGAGGAAG
ATATCCAGACAGGGCCTGTTCTTCTTCAGCTGAACCTCCTGCTTCAGCAAATCCGCGAAGCGTATATGGTAGGTATGGCC
TTAGCAGAGAAGGTTTTGTTCAAACATCTGGATTTTGTCAAATGTAATTGTNTACATTTCATAGTTTTAGCTGGAGTTTG
GCAGNTGTGGTTACCACTGCCATTAAATACCGCCTCATGTTCTTTTATTTCAGATGAGGCATATTTAATTTTAGCTGCAT
ATCCTAGGTTAGTTGAGTGAGTGACTCAATGTAGCAGGCCAGCAGGGTAGTTAGATTTGTCTAGGTGCCTAGCATTTCAG
GAGATATATGTTAGAACACAGTGACAGGCTTTGTGCCATCCATTGTTCAACCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17306.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis