Browse Element(s) Details


Os.17979.1.S1_at

Description gb:AK065504.1
DB_XREF= gi:32975522
TID=Os.17979.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17979 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013027C16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013027C16, full insert sequence.
FL= gb:AK065504.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1472011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g14680Os.54541.1.S1_at11/112+8092151..8093844UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os02g14680OsAffx.24252.1.S1_x_at1/112+8092151..8093844UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os02g14700OsAffx.24257.1.S1_at11/112+8106665..8108740hypothetical protein
LOC_Os02g14700OsAffx.9790.1.S1_x_at1/112+8106665..8108740hypothetical protein
LOC_Os02g14710OsAffx.12040.1.S1_at9/112+8111705..8113435expressed protein
LOC_Os02g14720Os.17979.1.S1_at11/112+8115219..8121650expressed protein
LOC_Os02g14730Os.17306.1.S1_at11/112+8136541..8143468Ubiquitin carboxyl-terminal hydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17979.1.S1_at--672--7431Chr02:8121074..8121098 (25 bp)
GTGTAATCTGGAGAGCTCACCGGAG
LOC_Os02g14720
Os.17979.1.S1_at--248--5311Chr02:8121147..8121171 (25 bp)
GAAGGAGAGTGCTCGGCTGACCACT
LOC_Os02g14720
Os.17979.1.S1_at--495--1571Chr02:8121198..8121222 (25 bp)
AGCTACGCGGGCTCAGACATCGTGG
LOC_Os02g14720
Os.17979.1.S1_at--765--2091Chr02:8121214..8121238 (25 bp)
ACATCGTGGCAGATGCCGGGACCAT
LOC_Os02g14720
Os.17979.1.S1_at--1059--6291Chr02:8121311..8121335 (25 bp)
GATGATGTTTTCCATGGCTCTTTCT
LOC_Os02g14720
Os.17979.1.S1_at--978--811Chr02:8121343..8121367 (25 bp)
ATGGTCATGGAAGAACACACTCGCA
LOC_Os02g14720
Os.17979.1.S1_at--613--2191Chr02:8121357..8121381 (25 bp)
ACACACTCGCAAGGGTTGGCATGGT
LOC_Os02g14720
Os.17979.1.S1_at--952--1351Chr02:8121389..8121413 (25 bp)
AGAGCACTCTAATTTTGACGCCTTG
LOC_Os02g14720
Os.17979.1.S1_at--85--10411Chr02:8121499..8121523 (25 bp)
TTTTGTTCACCCCTTTTTTGCATGT
LOC_Os02g14720
Os.17979.1.S1_at--222--1571Chr02:8121553..8121577 (25 bp)
AGCTATAGCTCTCCATTGTTATTGC
LOC_Os02g14720
Os.17979.1.S1_at--214--811Chr02:8121623..8121647 (25 bp)
ATGGGTCAACAGTTCTTTTGGCAGT
LOC_Os02g14720
Target Sequence 
GTGTAATCTGGAGAGCTCACCGGAGAGCTGGAGCGGGATAGCNACCAAGCTGCAGCAGGGAAGTGGTAAGAGAAGAAGGA
GAGTGCTCGGCTGACCACTGGTCGGAGGGTGCAGAGGCCGGANCAAGCTACGCGGGCTCAGACATCGTGGCAGATGCCGG
GACCATGCCGCAGCTGCCTTTCGCCGAGAACTTCGCCATGGCGCCAAGCCACTTCCGCCCGGAGAGCATCGAAGAACAGA
TGATGTTTTCCATGGCTCTTTCTTTAGCAGATGGTCATGGAAGAACACACTCGCAAGGGTTGGCATGGTTGTAGGTAGAG
CACTCTAATTTTGACGCCTTGCTGCCCTCTCCCTTGCGCTGCTGTTGCTGCCCTTCTCTCCCCTGCCTCCTGCTTCTGCC
TCCTTTTTGCCACCAGCTCTTGGCCTTTTTGTTCACCCCTTTTTTGCATGTGTTTTGTCGTCATGGTTTGATATAGATCC
AGCTATAGCTCTCCATTGTTATTGCTTATATGTATGTAAAATGGAATATGAGGAAATAGAAAAAAGGAAAATGGGTCAAC
AGTTCTTTTGGCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17979.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis