Browse Element(s) Details


OsAffx.24257.1.S1_at

Description tigr:9630.m01369
TID=OsAffx.24257.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1470011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g14650NANA2+8081869..8082579hypothetical protein
LOC_Os02g14660NANA2+8086257..8086658hypothetical protein
LOC_Os02g14670OsAffx.12039.1.S1_at11/112+8088749..8089068hypothetical protein
LOC_Os02g14680Os.54541.1.S1_at11/112+8092151..8093844UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os02g14680OsAffx.24252.1.S1_x_at1/112+8092151..8093844UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os02g14700OsAffx.24257.1.S1_at11/112+8106665..8108740hypothetical protein
LOC_Os02g14700OsAffx.9790.1.S1_x_at1/112+8106665..8108740hypothetical protein
LOC_Os02g14710OsAffx.12040.1.S1_at9/112+8111705..8113435expressed protein
LOC_Os02g14720Os.17979.1.S1_at11/112+8115219..8121650expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24257.1.S1_at--449--9191Chr02:8108159..8108183 (25 bp)
TGCCTTCACTGCACGGATGTTCCGA
LOC_Os02g14700
OsAffx.24257.1.S1_at--477--731Chr02:8108175..8108199 (25 bp)
ATGTTCCGACGGCTGCTGAAGATGC
LOC_Os02g14700
OsAffx.24257.1.S1_at--717--3271Chr02:8108294..8108318 (25 bp)
CAACAGAGCCTGTTCACCGTGGCCT
LOC_Os02g14700
OsAffx.24257.1.S1_at--627--9171Chr02:8108318..8108342 (25 bp)
TGCCGCGAGATCAGGCGTGCCTTGA
LOC_Os02g14700
OsAffx.24257.1.S1_at--267--9631Chr02:8108328..8108352 (25 bp)
TCAGGCGTGCCTTGAGAAACCAGAG
LOC_Os02g14700
OsAffx.24257.1.S1_at--578--3751Chr02:8108366..8108390 (25 bp)
CTCAGCGAGAGAGAGCTTGCACGTT
LOC_Os02g14700
OsAffx.24257.1.S1_at--844--6011Chr02:8108374..8108398 (25 bp)
GAGAGAGCTTGCACGTTGGCTCCTC
LOC_Os02g14700
OsAffx.24257.1.S1_at--609--10872Chr02:8108389..8108413 (25 bp)
TTGGCTCCTCTTCAGCGTCGACGAG
LOC_Os02g14700
OsAffx.24257.1.S1_at--187--5971Chr02:8108457..8108481 (25 bp)
GAGAAGGCCGGCATCTAGCAAATGC
LOC_Os02g14700
OsAffx.24257.1.S1_at--599--3551Chr02:8108468..8108492 (25 bp)
CATCTAGCAAATGCGCGCAGGCTCG
LOC_Os02g14700
OsAffx.24257.1.S1_at--131--5891Chr02:8108507..8108531 (25 bp)
GAGCTGGACGCTGACAGGAGACTAA
LOC_Os02g14700
Target Sequence 
TGCCTTCACTGCACGGATGTTCCGACGGCTGCTGAAGATGCCGACGGCGCCAGCGCGGCGGCGCGCTCCATGGAAATATC
CAACTACATGATGTACTTGCTCCTGTTCCAGCCGGACATGCTGATGCCCGGCACCCAACAGAGCCTGTTCACCGTGGCCT
GCCGCGAGATCAGGCGTGCCTTGAGAAACCAGAGGCAGCAGGAGAAGCTCAGCGAGAGAGAGCTTGCACGTTGGCTCCTC
TTCAGCGTCGACGAGCCCACCACGGCCGCTGCAGAGCAAGGAGGAGGAGGAGGAGGAGGAGAAGGCCGGCATCTAGCAAA
TGCGCGCAGGCTCGCCGGAGCGATGATGGAGCTGGACGCTGACAGGAGACTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24257.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis