Browse Element(s) Details


OsAffx.12039.1.S1_at

Description tigr:9630.m01366
TID=OsAffx.12039.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1467011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g14620OsAffx.24254.1.S1_at11/112+8067718..8070678hypothetical protein
LOC_Os02g14620OsAffx.6700.1.S1_at1/112+8067718..8070678hypothetical protein
LOC_Os02g14630NANA2+8075973..8077469UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os02g14640OsAffx.24255.1.S1_at11/112+8078799..8079480hypothetical protein
LOC_Os02g14650NANA2+8081869..8082579hypothetical protein
LOC_Os02g14660NANA2+8086257..8086658hypothetical protein
LOC_Os02g14670OsAffx.12039.1.S1_at11/112+8088749..8089068hypothetical protein
LOC_Os02g14680Os.54541.1.S1_at11/112+8092151..8093844UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os02g14680OsAffx.24252.1.S1_x_at1/112+8092151..8093844UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os02g14700OsAffx.24257.1.S1_at11/112+8106665..8108740hypothetical protein
LOC_Os02g14700OsAffx.9790.1.S1_x_at1/112+8106665..8108740hypothetical protein
LOC_Os02g14710OsAffx.12040.1.S1_at9/112+8111705..8113435expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12039.1.S1_at--142--1831Chr02:8089002..8089026 (25 bp)
ACGCCAGATTCATCCGCCTGGAGGT
LOC_Os02g14670
OsAffx.12039.1.S1_at--966--1251Chr02:8088997..8089021 (25 bp)
AGATTCATCCGCCTGGAGGTCTGGG
LOC_Os02g14670
OsAffx.12039.1.S1_at--636--3431Chr02:8088967..8088991 (25 bp)
CAGATCCGGGCTCCTTGAGGTTGGG
LOC_Os02g14670
OsAffx.12039.1.S1_at--260--7591Chr02:8088944..8088968 (25 bp)
GGGCTTGCCAGATCCGGCCAGCTCT
LOC_Os02g14670
OsAffx.12039.1.S1_at--259--8451Chr02:8088929..8088953 (25 bp)
GGCCAGCTCTGACAGCACATGCTCT
LOC_Os02g14670
OsAffx.12039.1.S1_at--392--1591Chr02:8088925..8088949 (25 bp)
AGCTCTGACAGCACATGCTCTTGGG
LOC_Os02g14670
OsAffx.12039.1.S1_at--71--5651Chr02:8088919..8088943 (25 bp)
GACAGCACATGCTCTTGGGCTAGAA
LOC_Os02g14670
OsAffx.12039.1.S1_at--1022--1491Chr02:8088916..8088940 (25 bp)
AGCACATGCTCTTGGGCTAGAAGAA
LOC_Os02g14670
OsAffx.12039.1.S1_at--930--611Chr02:8088911..8088935 (25 bp)
ATGCTCTTGGGCTAGAAGAAGATGA
LOC_Os02g14670
OsAffx.12039.1.S1_at--312--8491Chr02:8088788..8088895 (25 bp)
TGGCTCGAAGGAGATAGCGATTTGT
LOC_Os02g14670
OsAffx.12039.1.S1_at--370--8051Chr02:8088779..8088886 (25 bp)
GGAGATAGCGATTTGTAATGTGGAT
LOC_Os02g14670
Target Sequence 
ACGCCAGATTCATCCGCCTGGAGGTCTGGGGCTGCCAGATCCGGGCTCCTTGAGGTTGGGGCTTGCCAGATCCGGCCAGC
TCTGACAGCACATGCTCTTGGGCTAGAAGAAGATGATGATGGTGGCAGTGGTGGCTCGAAGGAGATAGCGATTTGTAATG
TGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12039.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis