Browse Element(s) Details


Os.54541.1.S1_at

Description gb:AK105563.1
DB_XREF= gi:32990772
TID=Os.54541.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54541 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-128-B11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-128-B11, full insert sequence.
FL= gb:AK105563.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1468011/11UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g14620OsAffx.24254.1.S1_at11/112+8067718..8070678hypothetical protein
LOC_Os02g14620OsAffx.6700.1.S1_at1/112+8067718..8070678hypothetical protein
LOC_Os02g14630NANA2+8075973..8077469UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os02g14640OsAffx.24255.1.S1_at11/112+8078799..8079480hypothetical protein
LOC_Os02g14650NANA2+8081869..8082579hypothetical protein
LOC_Os02g14660NANA2+8086257..8086658hypothetical protein
LOC_Os02g14670OsAffx.12039.1.S1_at11/112+8088749..8089068hypothetical protein
LOC_Os02g14680Os.54541.1.S1_at11/112+8092151..8093844UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os02g14680OsAffx.24252.1.S1_x_at1/112+8092151..8093844UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os02g14700OsAffx.24257.1.S1_at11/112+8106665..8108740hypothetical protein
LOC_Os02g14700OsAffx.9790.1.S1_x_at1/112+8106665..8108740hypothetical protein
LOC_Os02g14710OsAffx.12040.1.S1_at9/112+8111705..8113435expressed protein
LOC_Os02g14720Os.17979.1.S1_at11/112+8115219..8121650expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006805biological_processxenobiotic metabolism
GO:0009636biological_processresponse to toxin
GO:0009808biological_processlignin metabolism
GO:0042178biological_processxenobiotic catabolism
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0035251molecular_functionUDP-glucosyltransferase activity
GO:0047209molecular_functionconiferyl-alcohol glucosyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54541.1.S1_at--956--7951Chr02:8092572..8092596 (25 bp)
GGATGAACGCCGTCGTCCTGGAAGA
LOC_Os02g14680
Os.54541.1.S1_at--878--1811Chr02:8092566..8092590 (25 bp)
ACGCCGTCGTCCTGGAAGAGTCAGT
LOC_Os02g14680
Os.54541.1.S1_at--624--4871Chr02:8092298..8092322 (25 bp)
GCAGGTAAACTAGCAAACCCACGGG
LOC_Os02g14680
Os.54541.1.S1_at--1014--9931Chr02:8092272..8092296 (25 bp)
TACCCACTATTTGTACCGTAAGTAG
LOC_Os02g14680
Os.54541.1.S1_at--915--3991Chr02:8092256..8092280 (25 bp)
CGTAAGTAGTTATGCGGGTCTGTCT
LOC_Os02g14680
Os.54541.1.S1_at--1160--10411Chr02:8092247..8092271 (25 bp)
TTATGCGGGTCTGTCTGCTTCAATC
LOC_Os02g14680
Os.54541.1.S1_at--1088--4891Chr02:8092231..8092255 (25 bp)
GCTTCAATCCTTGAAAGGTTTCAGC
LOC_Os02g14680
Os.54541.1.S1_at--547--3391Chr02:8092210..8092234 (25 bp)
CAGCGTGTATTTTTTGTGTGGAAAC
LOC_Os02g14680
Os.54541.1.S1_at--572--2531Chr02:8092188..8092212 (25 bp)
AACTATTCAAAACTCTCGATGGGAT
LOC_Os02g14680
Os.54541.1.S1_at--695--2411Chr02:8092180..8092204 (25 bp)
AAAACTCTCGATGGGATGTCTACTC
LOC_Os02g14680
Os.54541.1.S1_at--954--6251Chr02:8092171..8092195 (25 bp)
GATGGGATGTCTACTCGTTGTTTAC
LOC_Os02g14680
Target Sequence 
GGATGAACGCCGTCGTCCTGGAAGAGTCAGTGGGGATGGCCCTGCGGCCACGCGCGCGGGAGGAGGACGTCGGCGGCACG
GTGGTGAGGCGTGGGGAGATCGCCGTCGCGGTGAAGGAGGTGATGGAGGGGGAGAAGGGGCACGGCGTGCGGCGGCGGGC
GAGGGAGCTGCAACAGGCGGCCGGTCGGGTGTGGTCGCCGGAAGGGTCGTCGCGGCGGGCTCTGGAGGTGGTTGCCGGCA
AGTGGAAGGCGGCGGCGCAGAAGTAAGGATGCATGCAGGTAAACTAGCAAACCCACGGGTTACCCACTATTTGTACCGTA
AGTAGTTATGCGGGTCTGTCTGCTTCAATCCTTGAAAGGTTTCAGCGTGTATTTTTTGTGTGGAAACTATTCAAAACTCT
CGATGGGATGTCTACTCGTTGTTTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54541.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis