Browse Element(s) Details


OsAffx.24254.1.S1_at

Description tigr:9630.m01361
TID=OsAffx.24254.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1462011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g14580OsAffx.12037.1.S1_at11/112+8041112..8048125retrotransposon protein, putative, unclassified
LOC_Os02g14590OsAffx.24252.1.S1_x_at1/112+8052103..8053518UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os02g14600Os.38686.1.S1_at9/112+8057679..8059665Glutelin type-B 4 precursor, putative, expressed
LOC_Os02g14610OsAffx.24253.1.S1_x_at11/112+8061474..8062228hypothetical protein
LOC_Os02g14610OsAffx.27523.1.S1_x_at1/112+8061474..8062228hypothetical protein
LOC_Os02g14620OsAffx.24254.1.S1_at11/112+8067718..8070678hypothetical protein
LOC_Os02g14620OsAffx.6700.1.S1_at1/112+8067718..8070678hypothetical protein
LOC_Os02g14630NANA2+8075973..8077469UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os02g14640OsAffx.24255.1.S1_at11/112+8078799..8079480hypothetical protein
LOC_Os02g14650NANA2+8081869..8082579hypothetical protein
LOC_Os02g14660NANA2+8086257..8086658hypothetical protein
LOC_Os02g14670OsAffx.12039.1.S1_at11/112+8088749..8089068hypothetical protein
LOC_Os02g14680Os.54541.1.S1_at11/112+8092151..8093844UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os02g14680OsAffx.24252.1.S1_x_at1/112+8092151..8093844UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24254.1.S1_at--1007--8011Chr02:8068181..8068203 (23 bp)
GGAGGAGATTCCAGCTTACAACTCT
LOC_Os02g14620
OsAffx.24254.1.S1_at--534--2193Chr04:13753329..13753349 (21 bp)
ACAACTCTATGATATACCCGAACGT
NONE
OsAffx.24254.1.S1_at--1144--4191Chr02:8070412..8070436 (25 bp)
CCCGAAGGATTCTTTGGGAGCATCA
LOC_Os02g14620
OsAffx.24254.1.S1_at--96--7651Chr02:8070427..8070451 (25 bp)
GGGAGCATCAAACCTCGTGTTGTCC
LOC_Os02g14620
OsAffx.24254.1.S1_at--66--9291Chr02:8070453..8070477 (25 bp)
TCCGCAGAAGACTCTTTCGGTAGAG
LOC_Os02g14620
OsAffx.24254.1.S1_at--549--6951Chr02:8070472..8070496 (25 bp)
GTAGAGAAATCAGCCATCCCAGCGC
LOC_Os02g14620
OsAffx.24254.1.S1_at--835--2751Chr02:8070523..8070547 (25 bp)
AAGACACTCTGCGAGTTCGTTGCTC
LOC_Os02g14620
OsAffx.24254.1.S1_at--899--7272Chr02:8070562..8070586 (25 bp)
GTGCCTATTGGACCACGTGTCAACG
LOC_Os02g14620
OsAffx.24254.1.S1_at--252--1911Chr02:8070576..8070600 (25 bp)
ACGTGTCAACGTGGACTTCGACCTC
LOC_Os02g14620
OsAffx.24254.1.S1_at--705--10631Chr02:8070592..8070616 (25 bp)
TTCGACCTCAAGACAGGCCTAATCA
LOC_Os02g14620
OsAffx.24254.1.S1_at--750--5651Chr02:8070603..8070627 (25 bp)
GACAGGCCTAATCACTATGGCGCAG
LOC_Os02g14620
Target Sequence 
GGAGGAGATTCCAGCTTACAACTCTATGATATACCCGAACGTGGAAGATTACGAAGGACGGACAGAGCCATCACCACCTG
CTGCCTACCTCTACAACCCATGGAGCACACAACAAGCAAAGAGATGTAGAGTAGTATTTATTAATTGCATGACTGGTTTC
AACTTGTCGAAAAATTTCCAAGATAATCCCGAAGGATTCTTTGGGAGCATCAAACCTCGTGTTGTCCCTCCGCAGAAGAC
TCTTTCGGTAGAGAAATCAGCCATCCCAGCGCCAACAACTTTCAAGACAATGGCTGATAAGACACTCTGCGAGTTCGTTG
CTCCATCCGCTGACAGCGTGCCTATTGGACCACGTGTCAACGTGGACTTCGACCTCAAGACAGGCCTAATCACTATGGCG
CAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24254.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis