Browse Element(s) Details


OsAffx.12037.1.S1_at

Description tigr:9630.m01356
TID=OsAffx.12037.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1458011/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g14530Os.8740.1.S1_at10/112+8004992..8017327protein kinase family protein, putative, expressed
LOC_Os02g14540OsAffx.24252.1.S1_x_at3/112+8018191..8019354hydroquinone glucosyltransferase, putative
LOC_Os02g14550OsAffx.23366.2.S1_s_at1/112+8021940..8026355transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g14560Os.46314.3.S1_at3/112+8027852..8031438transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g14560OsAffx.7362.1.S1_x_at1/112+8027852..8031438transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g14570OsAffx.24252.1.S1_x_at11/112+8033998..8035452UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os02g14580OsAffx.12037.1.S1_at11/112+8041112..8048125retrotransposon protein, putative, unclassified
LOC_Os02g14590OsAffx.24252.1.S1_x_at1/112+8052103..8053518UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os02g14600Os.38686.1.S1_at9/112+8057679..8059665Glutelin type-B 4 precursor, putative, expressed
LOC_Os02g14610OsAffx.24253.1.S1_x_at11/112+8061474..8062228hypothetical protein
LOC_Os02g14610OsAffx.27523.1.S1_x_at1/112+8061474..8062228hypothetical protein
LOC_Os02g14620OsAffx.24254.1.S1_at11/112+8067718..8070678hypothetical protein
LOC_Os02g14620OsAffx.6700.1.S1_at1/112+8067718..8070678hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12037.1.S1_at--136--7711Chr02:8041303..8041327 (25 bp)
GGGTCTCGAAGCATCACGACTGCGC
LOC_Os02g14580
OsAffx.12037.1.S1_at--657--2711Chr02:8041311..8041335 (25 bp)
AAGCATCACGACTGCGCGTCCTCGG
LOC_Os02g14580
OsAffx.12037.1.S1_at--121--9231Chr02:8041464..8041488 (25 bp)
TCCAGCTCCGCGTTGTAGCAGCACT
LOC_Os02g14580
OsAffx.12037.1.S1_at--775--8751Chr02:8041477..8041501 (25 bp)
TGTAGCAGCACTCGCGATCCAGCTT
LOC_Os02g14580
OsAffx.12037.1.S1_at--313--1911Chr02:8041569..8041593 (25 bp)
ACGTGTCGCTGTTGCGCTTTCTCCA
LOC_Os02g14580
OsAffx.12037.1.S1_at--393--6451Chr02:8041645..8041669 (25 bp)
GATCAAACACCATTCACCAAACACA
LOC_Os02g14580
OsAffx.12037.1.S1_at--329--2471Chr02:8041650..8041674 (25 bp)
AACACCATTCACCAAACACAAACAG
LOC_Os02g14580
OsAffx.12037.1.S1_at--519--3234Chr12:25717871..25717894 (24 bp)
CAAACACAAACAGAGGAGGCCGGCA
NONE
OsAffx.12037.1.S1_at--355--8893Chr03:4003013..4003037 (25 bp)
TGAGCGGGTGCGTGGCCTCGTCGTA
NONE
OsAffx.12037.1.S1_at--56--4294Chr12:25717914..25717938 (25 bp)
CCTCGTCGTAGGTGAAGAAGAGCGA
NONE
OsAffx.12037.1.S1_at--728--2775Chr12:25717931..25717955 (25 bp)
AAGAGCGAGGCGTTGGCTGTCGGGA
NONE
Target Sequence 
GGGTCTCGAAGCATCACGACTGCGCGTCCTCGGCGTTGCCCTCCCCCGCGGCGGCGGCGACGGCACAAGGGGACTGGAGG
AGCTAGTTGAGCGTGGCGCGGAGGCCGGCGGCGACACCCATCCACGCATGCTCCTCCGCGCTCATCCGGCGGAGCTTCTC
CTCCAGCTCCGCGTTGTAGCAGCACTCGCGATCCAGCTTGGCCTCCGCCGCACGCACCCTACCCGTCGTGGCGCACCGGC
GCGCCATGGCCGCCGCCAGCGCCCGGACGTGTCGCTGTTGCGCTTTCTCCAGCCCTGCGCGCATCTGCTCGACCTGCACG
ACATCCACCAAACACCAACGCCGATCAAACACCATTCACCAAACACAAACAGAGGAGGCCGGCAGCGTGAGCGGGTGCGT
GGCCTCGTCGTAGGTGAAGAAGAGCGAGGCGTTGGCTGTCGGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12037.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis