Browse Element(s) Details


Os.38686.1.S1_at

Description gb:AY196923.1
DB_XREF= gi:27803593
TID=Os.38686.1
CNT=20
FEA=FLmRNA
TIER=FL+Stack
STK=14
UG=Os.38686 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) glutelin precursor, mRNA, complete cds.
PROD=glutelin precursor
FL= gb:AY196923.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g146009/11Glutelin type-B 4 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g14570OsAffx.24252.1.S1_x_at11/112+8033998..8035452UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os02g14580OsAffx.12037.1.S1_at11/112+8041112..8048125retrotransposon protein, putative, unclassified
LOC_Os02g14590OsAffx.24252.1.S1_x_at1/112+8052103..8053518UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os02g14600Os.38686.1.S1_at9/112+8057679..8059665Glutelin type-B 4 precursor, putative, expressed
LOC_Os02g14610OsAffx.24253.1.S1_x_at11/112+8061474..8062228hypothetical protein
LOC_Os02g14610OsAffx.27523.1.S1_x_at1/112+8061474..8062228hypothetical protein
LOC_Os02g14620OsAffx.24254.1.S1_at11/112+8067718..8070678hypothetical protein
LOC_Os02g14620OsAffx.6700.1.S1_at1/112+8067718..8070678hypothetical protein
LOC_Os02g14630NANA2+8075973..8077469UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os02g14640OsAffx.24255.1.S1_at11/112+8078799..8079480hypothetical protein
LOC_Os02g14650NANA2+8081869..8082579hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0009845biological_processseed germination
GO:0042735cellular_componentprotein body
GO:0045735molecular_functionnutrient reservoir activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38686.1.S1_at--855--7411Chr02:8059210..8059234 (25 bp)
GTGTTCTTCGTCCAGGGCAATTACT
LOC_Os02g14600
Os.38686.1.S1_at--257--5291NONE
GAAGGATTTCAATATGTCGCGTTTA
NONE
Os.38686.1.S1_at--618--591Chr02:8059315..8059339 (25 bp)
ATGCCATGGTAAACCACATCGCGGG
LOC_Os02g14600
Os.38686.1.S1_at--46--2751Chr02:8059341..8059365 (25 bp)
AAGAACTCAGTTCTCCGTGCAATGC
LOC_Os02g14600
Os.38686.1.S1_at--774--1211Chr02:8059349..8059373 (25 bp)
AGTTCTCCGTGCAATGCCTGTGGAT
LOC_Os02g14600
Os.38686.1.S1_at--700--3191Chr02:8059360..8059384 (25 bp)
CAATGCCTGTGGATGTGATAGCTAA
LOC_Os02g14600
Os.38686.1.S1_at--435--8671Chr02:8059373..8059397 (25 bp)
TGTGATAGCTAATGCATATCGCATC
LOC_Os02g14600
Os.38686.1.S1_at--49--3751Chr02:8059397..8059421 (25 bp)
CTCAAGGCAGGAAGCTCGTAGCTTG
LOC_Os02g14600
Os.38686.1.S1_at--583--5991NONE
GAGACTCAAGAGGTGATTTAAGCCC
NONE
Os.38686.1.S1_at--1104--4831Chr02:8059569..8059593 (25 bp)
GCATAAAGCTTTGTGGAGTTTTGTA
LOC_Os02g14600
Os.38686.1.S1_at--606--1211Chr02:8059585..8059609 (25 bp)
AGTTTTGTATTTTGTCGTATGTGTA
LOC_Os02g14600
Target Sequence 
GTGTTCTTCGTCCAGGGCAATTACTAANTCATACCACAAAATTATGTGGTTATGAAGAAAGCAGAGCTTGAAGGATTTCA
ATATGTCGCGTTTAAGACAAACCCNAAATGCCATGGTAAACCACATCGCGGGGAAGAACTCAGTTCTCCGTGCAATGCCT
GTGGATGTGATAGCTAATGCATATCGCATCTCAAGGCAGGAAGCTCGTAGCTTGAAGAATAATAGGGGAGAAGAGATTGG
TGCTTTCACTCCTAGATATCAACAACNAAAAAATCCACCNAAGGGTACTCAAATNGCNAACGAAAGTGAGACTCAAGAGG
TGATTTAAGCCCNAGACATTATATATTAAAAAATAAAACCACATGCATAAAGCTTTGTGGAGTTTTGTATTTTGTCGTAT
GTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38686.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis