Browse Element(s) Details


OsAffx.12040.1.S1_at

Description tigr:9630.m01370
TID=OsAffx.12040.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g147109/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g14670OsAffx.12039.1.S1_at11/112+8088749..8089068hypothetical protein
LOC_Os02g14680Os.54541.1.S1_at11/112+8092151..8093844UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os02g14680OsAffx.24252.1.S1_x_at1/112+8092151..8093844UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os02g14700OsAffx.24257.1.S1_at11/112+8106665..8108740hypothetical protein
LOC_Os02g14700OsAffx.9790.1.S1_x_at1/112+8106665..8108740hypothetical protein
LOC_Os02g14710OsAffx.12040.1.S1_at9/112+8111705..8113435expressed protein
LOC_Os02g14720Os.17979.1.S1_at11/112+8115219..8121650expressed protein
LOC_Os02g14730Os.17306.1.S1_at11/112+8136541..8143468Ubiquitin carboxyl-terminal hydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12040.1.S1_at--385--1851Chr02:8111754..8111778 (25 bp)
ACGAAGTGCAGAGCCTGAGGGATTT
LOC_Os02g14710
OsAffx.12040.1.S1_at--719--6131NONE
GAGGGATTTGGTATCTCAACTGAAA
NONE
OsAffx.12040.1.S1_at--868--6891NONE
GTATCTCAACTGAAATCAACGCTGC
NONE
OsAffx.12040.1.S1_at--649--2591Chr02:8113046..8113070 (25 bp)
AACGCTGCAAGAGCATCACGGCGGC
LOC_Os02g14710
OsAffx.12040.1.S1_at--1131--3331Chr02:8113062..8113086 (25 bp)
CACGGCGGCGTGATGTACTTGAACA
LOC_Os02g14710
OsAffx.12040.1.S1_at--742--8971Chr02:8113081..8113105 (25 bp)
TGAACAACGCTGAGATTACTGCTGC
LOC_Os02g14710
OsAffx.12040.1.S1_at--47--4771Chr02:8113101..8113125 (25 bp)
GCTGCAGAAGCCAGGAAGTCTGATC
LOC_Os02g14710
OsAffx.12040.1.S1_at--661--8191Chr02:8113114..8113138 (25 bp)
GGAAGTCTGATCTCATGGCCAAGAA
LOC_Os02g14710
OsAffx.12040.1.S1_at--62--2431Chr02:8113142..8113166 (25 bp)
AAAACTGGACGAGAGCCTGGCTTCA
LOC_Os02g14710
OsAffx.12040.1.S1_at--139--10531Chr02:8113163..8113187 (25 bp)
TTCAGCACGCCAGTTCAGAGCACTG
LOC_Os02g14710
OsAffx.12040.1.S1_at--196--5591Chr02:8113205..8113229 (25 bp)
GAAATCCTTCGCCTCACAGATTGGG
LOC_Os02g14710
Target Sequence 
ACGAAGTGCAGAGCCTGAGGGATTTGGTATCTCAACTGAAATCAACGCTGCAAGAGCATCACGGCGGCGTGATGTACTTG
AACAACGCTGAGATTACTGCTGCAGAAGCCAGGAAGTCTGATCTCATGGCCAAGAAGGCAAAACTGGACGAGAGCCTGGC
TTCAGCACGCCAGTTCAGAGCACTGCTGCAGCAGCAGCTCCAGAAATCCTTCGCCTCACAGATTGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12040.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis