Browse Element(s) Details


Os.17364.1.S1_at

Description gb:BI812695
DB_XREF= gi:16578600
DB_XREF=F010B04
CLONE=F010B04
TID=Os.17364.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.17364 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_565737.1 (A.thaliana) expressed protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4572011/11glyoxalase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g45680NANA3+25729214..25731012retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g45690NANA3+25745066..25745896hypothetical protein
LOC_Os03g45700OsAffx.1197.1.S1_x_at4/113+25749851..25750207retrotransposon protein, putative, unclassified
LOC_Os03g45700OsAffx.9790.1.S1_x_at1/113+25749851..25750207retrotransposon protein, putative, unclassified
LOC_Os03g45710Os.26499.1.S1_at11/113+25754553..25755391ferredoxin family protein, expressed
LOC_Os03g45720OsAffx.25566.1.S1_at11/113+25755754..25758585glyoxalase family protein, expressed
LOC_Os03g45720Os.17364.1.S1_at11/113+25755754..25758585glyoxalase family protein, expressed
LOC_Os03g45730Os.14665.1.S1_at11/113+25759470..25764976Zinc knuckle family protein, expressed
LOC_Os03g45734OsAffx.7165.1.S1_at1/113+25774916..25776938retrotransposon, putative, centromere-specific

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Gene Ontology Classification
GO idTypeName
GO:0005975biological_processcarbohydrate metabolism
GO:0004462molecular_functionlactoylglutathione lyase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17364.1.S1_at--81--6651Chr03:25755870..25755894 (25 bp)
GTTGTTAGGAACATGTCCATGATAT
LOC_Os03g45720
Os.17364.1.S1_at--356--10091Chr03:25755865..25755889 (25 bp)
TAGGAACATGTCCATGATATCCCCA
LOC_Os03g45720
Os.17364.1.S1_at--522--771Chr03:25755858..25755882 (25 bp)
ATGTCCATGATATCCCCATGAATAA
LOC_Os03g45720
Os.17364.1.S1_at--1118--9431Chr03:25755831..25755855 (25 bp)
TCGGAGCTTTATACTGAATGAACTG
LOC_Os03g45720
Os.17364.1.S1_at--318--4891Chr03:25755826..25755850 (25 bp)
GCTTTATACTGAATGAACTGCTCCA
LOC_Os03g45720
Os.17364.1.S1_at--776--10151Chr03:25755822..25755846 (25 bp)
TATACTGAATGAACTGCTCCATGCT
LOC_Os03g45720
Os.17364.1.S1_at--608--9911Chr03:25755820..25755844 (25 bp)
TACTGAATGAACTGCTCCATGCTGT
LOC_Os03g45720
Os.17364.1.S1_at--719--3851Chr03:25755818..25755842 (25 bp)
CTGAATGAACTGCTCCATGCTGTAA
LOC_Os03g45720
Os.17364.1.S1_at--736--5271Chr03:25755816..25755840 (25 bp)
GAATGAACTGCTCCATGCTGTAATA
LOC_Os03g45720
Os.17364.1.S1_at--786--9231Chr03:25755805..25755829 (25 bp)
TCCATGCTGTAATATAGCTCTATAT
LOC_Os03g45720
Os.17364.1.S1_at--14--311Chr03:25755792..25755816 (25 bp)
ATAGCTCTATATGTTACTGGATTGC
LOC_Os03g45720
Target Sequence 
GTTGTTAGGAACATGTCCATGATATCCCCATGAATAANTTCGGAGCTTTATACTGAATGAACTGCTCCATGCTGTAATAT
AGCTCTATATGTTACTGGATTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17364.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis