Browse Element(s) Details


Os.17419.1.S1_at

Description gb:AK064016.1
DB_XREF= gi:32974034
TID=Os.17419.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17419 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033116D13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-124-H07, full insert sequence.
FL= gb:AK102990.1 gb:AK064016.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0985011/1139 kDa EF-Hand containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g09800Os.46715.1.S1_x_at11/1110+5066318..5068260retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g09800Os.46715.1.S1_at10/1110+5066318..5068260retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g09810OsAffx.361.1.S1_at11/1110+5068846..5075243retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g09820OsAffx.30362.1.S1_at11/1110+5081067..5084708No apical meristem protein
LOC_Os10g09830NANA10+5086662..5087024hypothetical protein
LOC_Os10g09850Os.17419.1.S1_at11/1110+5091636..509604439 kDa EF-Hand containing protein, putative, expressed
LOC_Os10g09860OsAffx.6627.1.S1_at11/1110+5100872..5102305Chalcone synthase 8, putative
LOC_Os10g09870Os.50561.1.S1_at11/1110+5107090..5113008TB2/DP1, HVA22 family protein, expressed
LOC_Os10g09870Os.51981.1.S1_at11/1110+5107090..5113008TB2/DP1, HVA22 family protein, expressed
LOC_Os10g09870Os.4824.1.A1_s_at11/1110+5107090..5113008TB2/DP1, HVA22 family protein, expressed
LOC_Os10g09880Os.40855.2.S1_x_at3/1110+5117300..5119003hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17419.1.S1_at--908--3891Chr10:5092185..5092209 (25 bp)
CTGTGGTCGATGAGGCGTTCAAGAT
LOC_Os10g09850
Os.17419.1.S1_at--570--8031Chr10:5092124..5092148 (25 bp)
GGAGTTCAAGAAATTGCTCACTGAG
LOC_Os10g09850
Os.17419.1.S1_at--58--6351Chr10:5092085..5092109 (25 bp)
GATGCTGCAGCTAGATGGCAATCCA
LOC_Os10g09850
Os.17419.1.S1_at--722--8491Chr10:5092070..5092094 (25 bp)
TGGCAATCCAATATCGGTTTCGACC
LOC_Os10g09850
Os.17419.1.S1_at--390--6831Chr10:5092055..5092079 (25 bp)
GGTTTCGACCAACAGTGTACTCCAT
LOC_Os10g09850
Os.17419.1.S1_at--484--7431Chr10:5092041..5092065 (25 bp)
GTGTACTCCATGAGCCAATGTCCAC
LOC_Os10g09850
Os.17419.1.S1_at--20--7251Chr10:5091986..5092010 (25 bp)
GTCGCCAATGGTGTCATCACCGAGT
LOC_Os10g09850
Os.17419.1.S1_at--1047--5951Chr10:5091916..5091940 (25 bp)
GAGAATATAATTTCCACTGGTGGTA
LOC_Os10g09850
Os.17419.1.S1_at--280--3511Chr10:5091823..5091847 (25 bp)
CATGTAACTGGAGACCTGGTGCAAA
LOC_Os10g09850
Os.17419.1.S1_at--277--6851Chr10:5091791..5091815 (25 bp)
GTGTTGGTGTTTGTAACTACGTTCT
LOC_Os10g09850
Os.17419.1.S1_at--1113--3231Chr10:5091696..5091720 (25 bp)
CAAGCTTTTGTTTTGGGTGCAGCAG
LOC_Os10g09850
Target Sequence 
CTGTGGTCGATGAGGCGTTCAAGATGGCGAAAGCCGAGGACGGGAAGGCGGTGGATGAAACGGAGTTCAAGAAATTGCTC
ACTGAGATCCTTGGGGCAGTGATGCTGCAGCTAGATGGCAATCCAATATCGGTTTCGACCAACAGTGTACTCCATGAGCC
AATGTCCACTTCTTCCACCCTGCTTTCGCCATCGCCGCCGTCGCCAATGGTGTCATCACCGAGTGAATANAAGCAAGATG
GAAGGAAGCTGATCATAGAATGGACAGTGGAGAATATAATTTCCACTGGTGGTAACAGTAACTGCAATATAATGCTGGTT
TTCTTCTGATCAATGAACNAACTGCAGTAACTTGATAGTTGCCATGTAACTGGAGACCTGGTGCAAATATGTTTGTGTTG
GTGTTTGTAACTACGTTCTAAGTGTTTAGTGTCGGAATAATAAGGCTTCTAATTAAGCCAGCAGTTGAACAACNGGGGAA
TAATTTATTTCAAGCTTTTGTTTTGGGTGCAGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17419.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis