Browse Element(s) Details


Os.17420.1.S1_at

Description gb:AK100432.1
DB_XREF= gi:32985641
TID=Os.17420.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.17420 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023088I08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023088I08, full insert sequence.
FL= gb:AK100432.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4636611/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g46350OsAffx.15951.1.S1_at11/116+28108238..28109953Patatin-like phospholipase family protein, expressed
LOC_Os06g46360OsAffx.28131.1.S1_at11/116+28128074..28129081hypothetical protein
LOC_Os06g46366Os.17420.1.S1_at11/116+28132803..28137103Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g46372OsAffx.15952.1.S1_at11/116+28138206..281415543-hydroxyisobutyrate dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os06g46372Os.51846.1.S1_x_at11/116+28138206..281415543-hydroxyisobutyrate dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os06g46380Os.7455.1.S1_at11/116+28142933..28147374Protein prenyltransferase alpha subunit repeat containing protein, expressed
LOC_Os06g46390Os.51643.1.S1_at11/116+28147995..28148791small nuclear ribonucleoprotein, putative, expressed
LOC_Os06g46400Os.18000.1.A1_at11/116+28150362..28155785YT521-B-like family protein, expressed
LOC_Os06g46410Os.22750.1.S1_at11/116+28157512..28163559auxin response factor 3, putative, expressed
LOC_Os06g46410OsAffx.28217.1.S1_at1/116+28157512..28163559auxin response factor 3, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17420.1.S1_at--745--5231Chr06:28136558..28136582 (25 bp)
GAATAGCTAGCTTTGATATGTTCAG
LOC_Os06g46366
Os.17420.1.S1_at--202--731Chr06:28136575..28136599 (25 bp)
ATGTTCAGTAGGTTTAGCTCGTCGA
LOC_Os06g46366
Os.17420.1.S1_at--566--1591Chr06:28136590..28136614 (25 bp)
AGCTCGTCGAACTTCAGAATCACCT
LOC_Os06g46366
Os.17420.1.S1_at--1131--5471Chr06:28136598..28136622 (25 bp)
GAACTTCAGAATCACCTATGCAAGA
LOC_Os06g46366
Os.17420.1.S1_at--264--5131Chr06:28136637..28136661 (25 bp)
GCAAATTTCCAATGGCGACAGCATA
LOC_Os06g46366
Os.17420.1.S1_at--298--3931Chr06:28136704..28136728 (25 bp)
CGGCGGATATAGTTAGGCAACACAG
LOC_Os06g46366
Os.17420.1.S1_at--322--9751Chr06:28136763..28136787 (25 bp)
TAATTTAGCAGTTTGACATCATAAG
LOC_Os06g46366
Os.17420.1.S1_at--461--3571Chr06:28136782..28136806 (25 bp)
CATAAGGTGTGGTTTGTTCAGTGTA
LOC_Os06g46366
Os.17420.1.S1_at--370--1131Chr06:28136857..28136881 (25 bp)
AGTGCAGCTAGTGGCTAGCCATACA
LOC_Os06g46366
Os.17420.1.S1_at--1043--3431Chr06:28136913..28136937 (25 bp)
CAGTTATACCAGCTTTTACAGTTCT
LOC_Os06g46366
Os.17420.1.S1_at--414--9871Chr06:28136929..28136953 (25 bp)
TACAGTTCTGTAGTCTGTGTGAGGA
LOC_Os06g46366
Target Sequence 
GAATAGCTAGCTTTGATATGTTCAGTAGGTTTAGCTCGTCGAACTTCAGAATCACCTATGCAAGAATAGGAAACATGGAG
CAAATTTCCAATGGCGACAGCATAAGATGATAAGAGGCTATGTGACAAGTGAGAACATGGAGAATGNCGGCGGATATAGT
TAGGCAACACAGAGAGCTGAACCNAACTATCCATTGTACNCGGTATTAATTTAGCAGTTTGACATCATAAGGTGTGGTTT
GTTCAGTGTAAGTTTAGTAGTTCTGGTCGTCTGGTATTACAAAATTACATCACGAAAGTGAGTGCAGCTAGTGGCTAGCC
ATACAGATATATATACAGGTATAGGTATGTGAAATACAGTTATACCAGCTTTTACAGTTCTGTAGTCTGTGTGAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17420.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis