Browse Element(s) Details


Os.17448.1.S1_at

Description gb:AK070961.1
DB_XREF= gi:32980984
TID=Os.17448.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.17448 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023066B13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023066B13, full insert sequence.
FL= gb:AK070961.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1085010/11Mnd1 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g10840Os.49497.1.S1_at11/119+5917077..5928773Transcription factor HBP-1b, putative, expressed
LOC_Os09g10850Os.17448.1.S1_at10/119+5934114..5939552Mnd1 family protein, expressed
LOC_Os09g10860NANA9+5942545..5942847hypothetical protein
LOC_Os09g10870Os.6109.1.S1_at1/119+5953108..5957902retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g10880OsAffx.30038.1.S1_at2/119+5960154..5965211hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17448.1.S1_at--843--5291Chr09:5936805..5936829 (25 bp)
GAAGGCTGTAGAGCAACACCACAAG
LOC_Os09g10850
Os.17448.1.S1_at--763--8171NONE
GGAACTGACTGCTTATGCTGATAGT
NONE
Os.17448.1.S1_at--1102--6151Chr09:5936422..5936446 (25 bp)
GAGGTTGCTCATGCGGCAGCTAACA
LOC_Os09g10850
Os.17448.1.S1_at--71--5611Chr09:5936291..5936315 (25 bp)
GACAATATCTTCACTCTGCAACAGT
LOC_Os09g10850
Os.17448.1.S1_at--645--3011Chr09:5934308..5934332 (25 bp)
AATGCATAACATCCTGGTTGCCCTG
LOC_Os09g10850
Os.17448.1.S1_at--904--6671Chr09:5934292..5934316 (25 bp)
GTTGCCCTGTTACAAAACCGTATGT
LOC_Os09g10850
Os.17448.1.S1_at--476--2611Chr09:5934277..5934301 (25 bp)
AACCGTATGTAACCCAACTCAGCAA
LOC_Os09g10850
Os.17448.1.S1_at--149--6091Chr09:5934247..5934271 (25 bp)
GAGTAGTTCACCTGGAATCTGTAGA
LOC_Os09g10850
Os.17448.1.S1_at--646--5331Chr09:5934224..5934248 (25 bp)
GAAGTTTATTCATACCCATGTTAGC
LOC_Os09g10850
Os.17448.1.S1_at--83--271Chr09:5934177..5934201 (25 bp)
ATATGCTCCATATTTTCTGCTTTGT
LOC_Os09g10850
Os.17448.1.S1_at--80--2911Chr09:5934148..5934172 (25 bp)
AAGGTACCTATGGAATGCTGTCAGA
LOC_Os09g10850
Target Sequence 
GAAGGCTGTAGAGCAACACCACAAGAAGTTAAAGGNGGAACTGACTGCTTATGCTGATAGTGATCCNGCAGCANCTAGAG
GCAATGAATGATGCTATTGAGGTTGCTCATGCGGCAGCTAACAGATGGACAGACAATATCTTCACTCTGCAACAGTGGTG
TTCGACCACTTTCCCACAAGCAAAAGAACAACTCGAACACATGTACAGGGAGGTGGGGATAACTGAAGATTTCGAATATC
TGCAGTAATGCATAACATCCTGGTTGCCCTGTTACAAAACCGTATGTAACCCAACTCAGCAAATCTAGAGTAGTTCACCT
GGAATCTGTAGAAGTTTATTCATACCCATGTTAGCAATCTTACAGTAAATGATCCCNAATATGCTCCATATTTTCTGCTT
TGTAAGTAAGGTACCTATGGAATGCTGTCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17448.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis